Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3700

Experiment: D-Trehalose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose (C)
106,255	+				+0.9
106,260	+				+1.0
106,260	+				-0.1
106,260	+				-2.2
106,260	+				-2.3
106,265	+				-0.5
106,265	+				+1.0
106,270	+				+0.4
106,270	+				-0.9
106,275	+				-1.2
106,277	+				-0.1
106,295	+				-1.5
106,311	+				+0.5
106,316	+				-0.8
106,316	+				-0.5
106,316	+				+0.3
106,316	+				+0.8
106,316	+				-1.9
106,318	+				-1.4
106,318	+				-1.0
106,319	+				-0.1
106,323	+				-0.5
106,324	-				+0.2
106,326	-				-0.8
106,326	-				-1.0
106,326	-				+0.2
106,326	-				+0.7
106,326	-				-0.5
106,326	-				-0.9
106,343	+				+0.9
106,343	+				-0.4
106,343	+				+0.9
106,343	+				-0.2
106,343	+				-1.6
106,343	+				-1.4
106,343	+				+0.5
106,343	+				+0.8
106,348	+				+0.4
106,348	+				+1.1
106,351	-				-1.0
106,351	-				+0.9
106,351	-				-0.3
106,351	-				+0.8
106,351	-				-0.3
106,351	-				-3.5
106,351	-				+0.5
106,351	-				+0.1
106,351	-				+0.5
106,351	-				-1.1
106,353	+				+0.8
106,353	+				+0.2
106,353	+				+0.3
106,353	+				-1.5
106,355	+				+0.6
106,356	-				-0.7
106,361	-				+0.3
106,361	-				+0.1
106,361	-				-0.8
106,361	-				+0.5
106,363	-				+0.2
106,363	-				-0.0
106,365	+				+0.5
106,365	+				+0.3
106,373	-				+1.4
106,396	-				+0.0
106,445	+				+0.0
106,453	-				-0.8
106,460	-				+0.4
106,462	+				-1.0
106,462	+				-0.3
106,463	-				-0.6
106,465	-				-0.6
106,474	+				-0.8
106,482	+				+0.2
106,489	+				+0.6
106,490	+				+1.1
106,490	+				-1.4
106,490	+				+0.5
106,490	+				-0.7
106,490	-				+2.8
106,497	+				+2.4
106,498	-				-0.7
106,498	-				+1.2
106,532	-				-0.4
106,887	+				-0.3
106,887	+				-2.4
106,887	+				-1.4
106,887	+				-0.5
106,887	+				-0.7
106,887	+				-2.0
106,887	+				+0.0
106,887	+				-0.3
106,897	+				-0.9
106,897	+				+0.1
106,897	+				-0.9
106,926	+				+0.7
106,966	+				+1.3
106,973	+				+0.8
106,973	+				-0.2
106,973	+				+0.6
106,973	+				-0.9
106,974	-				-0.3
106,974	-				+0.2
106,978	+				-0.2
106,978	+				+0.3
106,981	-				+0.7
106,981	-				+0.4
106,981	-				-0.3
106,994	-				-2.0
106,995	+				-0.0
106,995	+				-0.6
107,003	-				+0.9
107,003	-				+0.4
107,003	-				+0.3
107,003	-				+1.5
107,003	-				-0.2
107,029	+				-1.0
107,029	+				-0.4
107,029	+				-0.8
107,029	+				+0.4
107,030	+				+0.4
107,037	-				+0.6
107,048	+				-0.1
107,062	+				-0.7
107,063	+				+0.1
107,063	+				+0.8
107,064	-				+0.6
107,067	+				-0.4
107,067	+				-0.3
107,067	+				-0.1
107,067	+				-3.1
107,070	-				+2.6
107,075	-				+0.2
107,075	-				-0.0
107,076	-				+0.8
107,078	+				+0.1
107,099	+				-1.9
107,106	+				-1.9
107,123	+				+0.0
107,124	-				-1.2
107,143	+				+0.6
107,143	+				+0.7
107,143	+				+0.4
107,144	+				-1.1
107,151	-				-0.3
107,160	+				-1.2
107,183	+				-0.4
107,183	+				+1.5
107,183	+				+0.0
107,183	+				-0.5
107,183	+				+0.4
107,183	+				-1.8
107,191	+				+0.5
107,191	-				-0.0
107,191	-				+0.1
107,201	-				-0.8
107,205	+				-0.2
107,205	+				-0.4
107,210	+				-1.4
107,210	+				+0.8
107,210	+				-1.1
107,210	+				-0.0
107,210	+				-1.5
107,210	+				-0.6
107,210	+				+0.1
107,210	+				+0.2
107,218	-				+0.9
107,218	-				-1.4
107,218	-				+0.8
107,218	-				+0.8
107,218	-				-0.3
107,218	-				-0.0
107,252	+				-0.8
107,272	+				-1.8
107,272	+				+0.2
107,287	-		Dshi_3700	0.10	-3.4
107,296	+		Dshi_3700	0.11	+0.4
107,333	+		Dshi_3700	0.15	-0.4
107,360	+		Dshi_3700	0.18	-0.2
107,367	+		Dshi_3700	0.19	-1.5
107,368	-		Dshi_3700	0.19	-0.8
107,368	-		Dshi_3700	0.19	+0.2
107,393	+		Dshi_3700	0.22	+0.2
107,395	+		Dshi_3700	0.22	+0.6
107,409	-		Dshi_3700	0.24	-0.1
107,409	-		Dshi_3700	0.24	+0.1
107,436	-		Dshi_3700	0.27	-0.6
107,469	-		Dshi_3700	0.31	+0.8
107,471	-		Dshi_3700	0.31	+1.0
107,538	+		Dshi_3700	0.38	+0.1
107,581	+		Dshi_3700	0.43	+0.0
107,615	-		Dshi_3700	0.47	-0.9
107,667	+		Dshi_3700	0.53	+0.6
107,675	-		Dshi_3700	0.54	-0.4
107,675	-		Dshi_3700	0.54	+0.9
107,682	+		Dshi_3700	0.55	-0.0
107,682	+		Dshi_3700	0.55	-0.3
107,685	-		Dshi_3700	0.55	-2.0
107,690	-		Dshi_3700	0.56	+0.0
107,698	-		Dshi_3700	0.56	-0.2
107,771	-		Dshi_3700	0.65	-1.4
107,778	+		Dshi_3700	0.65	+0.3
107,843	-		Dshi_3700	0.73	-0.5
107,847	+		Dshi_3700	0.73	-0.3
107,868	-		Dshi_3700	0.76	-0.1
107,876	-		Dshi_3700	0.76	-0.8
107,913	+		Dshi_3700	0.81	+0.2
107,914	-		Dshi_3700	0.81	+1.5
107,914	-		Dshi_3700	0.81	-0.2
107,924	+		Dshi_3700	0.82	-0.6
107,927	-		Dshi_3700	0.82	+0.8
107,932	-		Dshi_3700	0.83	-0.3
107,969	-		Dshi_3700	0.87	-0.1
107,995	-		Dshi_3700	0.90	-1.1
107,998	-				-0.9
108,045	-				+0.1
108,112	-				-1.4
108,138	+				+1.8
108,187	-				-1.5
108,203	-				-0.2
108,311	-		Dshi_3701	0.18	-0.4
108,315	+		Dshi_3701	0.18	-0.0
108,341	+		Dshi_3701	0.20	-1.4
108,341	+		Dshi_3701	0.20	+1.8
108,349	-		Dshi_3701	0.21	-0.5
108,363	+		Dshi_3701	0.22	-0.6
108,363	+		Dshi_3701	0.22	-2.4
108,371	-		Dshi_3701	0.23	-0.2
108,391	+		Dshi_3701	0.24	-1.4
108,399	-		Dshi_3701	0.25	+0.0
108,445	+		Dshi_3701	0.29	-1.9
108,445	+		Dshi_3701	0.29	-1.6
108,445	-		Dshi_3701	0.29	-0.1
108,453	-		Dshi_3701	0.30	-2.8
108,459	+		Dshi_3701	0.30	+0.4
108,459	+		Dshi_3701	0.30	-1.4
108,459	+		Dshi_3701	0.30	+0.7
108,467	-		Dshi_3701	0.31	+0.5
108,526	+		Dshi_3701	0.36	+0.6
108,534	-		Dshi_3701	0.36	+0.3
108,534	-		Dshi_3701	0.36	+0.5
108,534	-		Dshi_3701	0.36	+0.2
108,549	-		Dshi_3701	0.38	-0.7
108,554	-		Dshi_3701	0.38	-0.4
108,556	-		Dshi_3701	0.38	-1.9
108,559	+		Dshi_3701	0.39	+0.7
108,559	+		Dshi_3701	0.39	+0.6
108,559	+		Dshi_3701	0.39	-0.9
108,607	-		Dshi_3701	0.42	+2.1
108,615	-		Dshi_3701	0.43	-0.3
108,689	-		Dshi_3701	0.49	-0.0
108,693	+		Dshi_3701	0.50	-0.3
108,730	-		Dshi_3701	0.53	-0.2
108,766	-		Dshi_3701	0.56	-1.2
108,793	+		Dshi_3701	0.58	+1.0
108,814	-		Dshi_3701	0.60	+0.2
108,824	+		Dshi_3701	0.61	-1.8
108,828	-		Dshi_3701	0.61	-0.1
108,846	+		Dshi_3701	0.62	+0.0
108,861	+		Dshi_3701	0.64	+0.6
108,862	+		Dshi_3701	0.64	-1.4
108,875	+		Dshi_3701	0.65	+1.0
108,875	+		Dshi_3701	0.65	+0.4
108,881	-		Dshi_3701	0.65	+0.6
108,905	-		Dshi_3701	0.67	+0.1
108,907	+		Dshi_3701	0.68	-0.8
108,932	-		Dshi_3701	0.70	+0.3
108,934	-		Dshi_3701	0.70	-1.2
109,021	+		Dshi_3701	0.77	+0.2
109,028	+		Dshi_3701	0.78	-0.2