Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2135

Experiment: D-Trehalose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2133 and Dshi_2134 are separated by 209 nucleotidesDshi_2134 and Dshi_2135 are separated by 122 nucleotidesDshi_2135 and Dshi_2136 are separated by 99 nucleotidesDshi_2136 and Dshi_2137 overlap by 4 nucleotides Dshi_2133: Dshi_2133 - protein of unknown function DUF1284 (RefSeq), at 2,263,901 to 2,264,419 _2133 Dshi_2134: Dshi_2134 - BioY protein (RefSeq), at 2,264,629 to 2,265,222 _2134 Dshi_2135: Dshi_2135 - short-chain dehydrogenase/reductase SDR (RefSeq), at 2,265,345 to 2,266,010 _2135 Dshi_2136: Dshi_2136 - stationary-phase survival protein SurE (RefSeq), at 2,266,110 to 2,266,895 _2136 Dshi_2137: Dshi_2137 - protein-L-isoaspartate O-methyltransferase (RefSeq), at 2,266,892 to 2,267,542 _2137 Position (kb) 2265 2266 2267Strain fitness (log2 ratio) -2 -1 0 1at 2264.449 kb on + strandat 2264.449 kb on + strandat 2264.569 kb on + strandat 2264.813 kb on + strand, within Dshi_2134at 2265.205 kb on - strandat 2265.323 kb on - strandat 2265.329 kb on + strandat 2265.455 kb on + strand, within Dshi_2135at 2266.051 kb on + strandat 2266.089 kb on + strandat 2266.101 kb on + strandat 2266.106 kb on + strandat 2266.711 kb on - strand, within Dshi_2136

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
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2,264,449 + +0.5
2,264,449 + +0.1
2,264,569 + +0.6
2,264,813 + Dshi_2134 0.31 -1.4
2,265,205 - +0.2
2,265,323 - -0.4
2,265,329 + -1.8
2,265,455 + Dshi_2135 0.17 -2.7
2,266,051 + -1.0
2,266,089 + -0.5
2,266,101 + -1.0
2,266,106 + -0.9
2,266,711 - Dshi_2136 0.76 -2.2

Or see this region's nucleotide sequence