Strain Fitness in Shewanella oneidensis MR-1 around SO1440

Experiment: L-Glutamine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Glutamine (C)
1,501,577	-		SO_1439	0.62	-0.8
1,501,585	+		SO_1439	0.64	+0.1
1,501,631	-		SO_1439	0.74	-0.1
1,501,656	+		SO_1439	0.80	-0.1
1,501,656	-		SO_1439	0.80	-0.3
1,501,664	-		SO_1439	0.81	-0.4
1,501,664	-		SO_1439	0.81	+0.6
1,501,676	+		SO_1439	0.84	-0.7
1,501,676	+		SO_1439	0.84	-0.3
1,501,676	+		SO_1439	0.84	-0.1
1,501,676	+		SO_1439	0.84	-0.1
1,501,678	-		SO_1439	0.84	-0.3
1,501,684	-		SO_1439	0.86	-0.5
1,501,736	-				-0.6
1,501,746	-				+0.8
1,501,762	-				-1.1
1,501,821	+				+0.6
1,501,827	-				-1.0
1,501,829	-				-0.7
1,501,981	+				+0.6
1,502,035	+				-0.1
1,502,082	-				-0.2
1,502,124	+				-1.3
1,502,124	+				-0.7
1,502,175	+				+0.0
1,502,304	+				+0.5
1,502,319	-				-0.4
1,502,332	+				+0.0
1,502,340	-				+0.3
1,502,391	-				-1.2
1,502,391	-				-0.1
1,502,445	-				+0.0
1,502,454	+				+0.2
1,502,476	+				+0.3
1,502,476	+				+0.6
1,502,476	+				-0.9
1,502,476	+				+0.0
1,502,532	-				+0.0
1,502,547	+		SO1440	0.10	+0.8
1,502,562	+		SO1440	0.12	+0.2
1,502,572	-		SO1440	0.13	+1.0
1,502,578	+		SO1440	0.14	+0.1
1,502,578	+		SO1440	0.14	-0.2
1,502,583	+		SO1440	0.15	+0.3
1,502,583	+		SO1440	0.15	-0.4
1,502,591	-		SO1440	0.16	-0.2
1,502,591	-		SO1440	0.16	-0.4
1,502,621	-		SO1440	0.20	+1.1
1,502,624	-		SO1440	0.20	-0.3
1,502,666	-		SO1440	0.26	+0.0
1,502,672	+		SO1440	0.26	+0.2
1,502,680	-		SO1440	0.28	+0.0
1,502,680	-		SO1440	0.28	+0.0
1,502,752	-		SO1440	0.37	-0.1
1,502,773	+		SO1440	0.40	-0.0
1,502,773	+		SO1440	0.40	+0.3
1,502,783	+		SO1440	0.41	+1.1
1,502,832	+		SO1440	0.48	-0.4
1,502,839	-		SO1440	0.48	-0.2
1,502,840	-		SO1440	0.49	-0.1
1,502,840	-		SO1440	0.49	-0.3
1,502,840	-		SO1440	0.49	+0.0
1,502,845	-		SO1440	0.49	+1.4
1,502,846	-		SO1440	0.49	-0.3
1,502,848	+		SO1440	0.50	+0.8
1,502,886	+		SO1440	0.55	-0.8
1,502,890	+		SO1440	0.55	+0.0
1,502,897	-		SO1440	0.56	-0.0
1,502,939	-		SO1440	0.62	-0.9
1,502,939	-		SO1440	0.62	+0.0
1,502,939	-		SO1440	0.62	-0.5
1,502,941	-		SO1440	0.62	-0.4
1,502,943	+		SO1440	0.62	-0.6
1,502,943	+		SO1440	0.62	-0.1
1,502,943	+		SO1440	0.62	+0.6
1,502,953	-		SO1440	0.64	+0.5
1,502,953	-		SO1440	0.64	-1.0
1,502,974	-		SO1440	0.66	-0.3
1,502,979	-		SO1440	0.67	+0.2
1,502,984	+		SO1440	0.68	+0.1
1,502,984	+		SO1440	0.68	-0.3
1,502,985	-		SO1440	0.68	-0.5
1,503,000	+		SO1440	0.70	-0.5
1,503,000	+		SO1440	0.70	+0.0
1,503,008	-		SO1440	0.71	-0.6
1,503,008	-		SO1440	0.71	+0.7
1,503,008	-		SO1440	0.71	+0.1
1,503,034	-		SO1440	0.74	+0.1
1,503,053	-		SO1440	0.77	-0.6
1,503,053	-		SO1440	0.77	-0.1
1,503,057	-		SO1440	0.77	+0.6
1,503,083	+		SO1440	0.81	+0.4
1,503,083	+		SO1440	0.81	-0.2
1,503,091	-		SO1440	0.82	-0.3
1,503,092	-		SO1440	0.82	-0.1
1,503,094	+		SO1440	0.82	+0.6
1,503,094	+		SO1440	0.82	-1.1
1,503,097	-		SO1440	0.82	-0.1
1,503,102	-		SO1440	0.83	+0.3
1,503,104	+		SO1440	0.83	+0.3
1,503,134	+		SO1440	0.87	+0.3
1,503,160	+				+0.0
1,503,160	+				+1.0
1,503,160	+				+0.3
1,503,161	+				-0.3
1,503,162	-				+0.9
1,503,168	-				-0.2
1,503,168	-				-0.1
1,503,168	-				-0.8
1,503,168	-				-1.4
1,503,191	+				+0.7
1,503,196	+				+0.7
1,503,196	+				+0.6
1,503,196	+				+0.5
1,503,197	+				+0.6
1,503,197	+				+0.1
1,503,197	+				-0.1
1,503,197	+				+0.9
1,503,197	+				+0.0
1,503,198	+				+0.1
1,503,199	-				+0.7
1,503,199	-				+0.2
1,503,199	-				-0.7
1,503,199	-				+0.2
1,503,201	-				-0.4
1,503,205	-				-0.5
1,503,205	-				-0.6
1,503,205	-				+0.3
1,503,205	-				+0.0
1,503,205	-				-0.3
1,503,205	-				-0.5
1,503,205	-				+0.0
1,503,205	-				+0.3
1,503,205	-				+1.3
1,503,207	+				-1.7
1,503,212	+				-1.6
1,503,212	+				+0.3
1,503,215	-				-0.2
1,503,215	-				-0.2
1,503,222	-				-0.1
1,503,222	-				-0.4
1,503,247	+				+0.2
1,503,257	-				+0.2
1,503,301	+				-0.1
1,503,301	+				+0.3
1,503,301	+				-0.6
1,503,301	+				+0.4
1,503,301	+				+0.2
1,503,301	+				-1.1
1,503,302	+				+0.8
1,503,309	+				+0.4
1,503,309	+				-1.2
1,503,309	+				+0.5
1,503,309	+				-0.1
1,503,309	-				+0.1
1,503,309	-				-0.4
1,503,309	-				+0.9
1,503,310	-				-0.6
1,503,312	-				+0.3
1,503,316	+				+0.2
1,503,316	+				+0.5
1,503,317	-				+0.4
1,503,317	-				+0.5
1,503,317	-				+0.4
1,503,318	+				+1.7
1,503,318	-				-1.3
1,503,324	-				+1.6
1,503,324	-				-0.9
1,503,324	-				-0.5
1,503,324	-				+0.5
1,503,324	-				-0.4
1,503,324	-				-1.7
1,503,324	-				+0.3
1,503,329	+				-1.7
1,503,400	-				+0.6
1,503,455	-				-0.7
1,503,506	+				-0.7
1,503,538	+				-0.9
1,503,539	+				+0.4
1,503,539	+				+0.1
1,503,543	+				-0.2
1,503,543	+				+0.9
1,503,547	-				+0.6
1,503,553	-				+0.7
1,503,578	+				-0.3
1,503,590	+		SO1441	0.10	+0.7
1,503,596	-		SO1441	0.11	+0.0
1,503,599	+		SO1441	0.11	+0.0
1,503,607	+		SO1441	0.12	+0.1
1,503,615	-		SO1441	0.12	-0.5
1,503,615	-		SO1441	0.12	+0.9
1,503,617	+		SO1441	0.13	+0.0
1,503,625	-		SO1441	0.13	-1.3
1,503,635	-		SO1441	0.14	+0.6
1,503,672	+		SO1441	0.18	+0.3
1,503,680	-		SO1441	0.18	-0.6
1,503,682	+		SO1441	0.19	+0.4
1,503,688	+		SO1441	0.19	+0.2
1,503,688	+		SO1441	0.19	+0.6
1,503,688	-		SO1441	0.19	-0.8
1,503,690	-		SO1441	0.19	+0.4
1,503,690	-		SO1441	0.19	-0.1
1,503,721	+		SO1441	0.22	-0.3
1,503,755	-		SO1441	0.25	+0.3
1,503,756	+		SO1441	0.25	+1.0
1,503,756	+		SO1441	0.25	-1.0
1,503,756	+		SO1441	0.25	+0.3
1,503,756	+		SO1441	0.25	+0.1
1,503,756	+		SO1441	0.25	-0.1
1,503,756	+		SO1441	0.25	-2.0
1,503,756	+		SO1441	0.25	-0.2
1,503,756	+		SO1441	0.25	-0.1
1,503,756	+		SO1441	0.25	+0.5
1,503,756	+		SO1441	0.25	+0.6
1,503,756	+		SO1441	0.25	-0.2
1,503,756	+		SO1441	0.25	-0.6
1,503,756	+		SO1441	0.25	+0.7
1,503,756	+		SO1441	0.25	+0.5
1,503,756	+		SO1441	0.25	-0.9
1,503,756	+		SO1441	0.25	+0.2
1,503,764	-		SO1441	0.26	+1.0
1,503,764	-		SO1441	0.26	+0.0
1,503,764	-		SO1441	0.26	+1.0
1,503,764	-		SO1441	0.26	-1.4
1,503,764	-		SO1441	0.26	-1.1
1,503,764	-		SO1441	0.26	+0.3
1,503,764	-		SO1441	0.26	-0.2
1,503,764	-		SO1441	0.26	-0.8
1,503,764	-		SO1441	0.26	+0.4
1,503,764	-		SO1441	0.26	-0.4
1,503,849	+		SO1441	0.34	+0.2
1,503,849	+		SO1441	0.34	+0.0
1,503,849	+		SO1441	0.34	+0.2
1,503,850	-		SO1441	0.34	-0.4
1,503,850	-		SO1441	0.34	+1.0
1,503,855	+		SO1441	0.35	+0.1
1,503,855	+		SO1441	0.35	-0.2
1,503,857	-		SO1441	0.35	-0.2
1,503,857	-		SO1441	0.35	+1.5
1,503,857	-		SO1441	0.35	+0.5
1,503,860	+		SO1441	0.35	+0.5
1,503,865	+		SO1441	0.35	+0.6
1,503,870	+		SO1441	0.36	-0.6
1,503,870	+		SO1441	0.36	+0.0
1,503,870	+		SO1441	0.36	+1.0
1,503,870	+		SO1441	0.36	+0.1
1,503,870	+		SO1441	0.36	+0.9
1,503,870	+		SO1441	0.36	+0.6
1,503,870	+		SO1441	0.36	-0.1
1,503,870	+		SO1441	0.36	-0.1
1,503,870	+		SO1441	0.36	+0.9
1,503,878	-		SO1441	0.37	+1.5
1,503,878	-		SO1441	0.37	+0.5
1,503,878	-		SO1441	0.37	-0.4
1,503,878	-		SO1441	0.37	+1.2
1,503,878	-		SO1441	0.37	-1.3
1,503,878	-		SO1441	0.37	+0.3
1,503,880	-		SO1441	0.37	-0.3
1,503,959	-		SO1441	0.44	-0.6
1,504,031	+		SO1441	0.51	+0.5
1,504,039	-		SO1441	0.51	+0.2
1,504,044	-		SO1441	0.52	-0.9
1,504,055	-		SO1441	0.53	-0.2
1,504,133	-		SO1441	0.60	+1.9
1,504,140	+		SO1441	0.61	+0.4
1,504,163	-		SO1441	0.63	+0.4
1,504,197	-		SO1441	0.66	+0.0
1,504,202	+		SO1441	0.66	-0.1
1,504,202	+		SO1441	0.66	-0.4
1,504,202	+		SO1441	0.66	+0.1
1,504,202	+		SO1441	0.66	-0.4
1,504,210	-		SO1441	0.67	+1.7
1,504,210	-		SO1441	0.67	-0.4
1,504,210	-		SO1441	0.67	-0.3
1,504,210	-		SO1441	0.67	+0.3
1,504,210	-		SO1441	0.67	+0.2
1,504,210	-		SO1441	0.67	+0.7
1,504,210	-		SO1441	0.67	+0.1
1,504,210	-		SO1441	0.67	+1.0