Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06790

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06780 and PGA1_c06790 are separated by 112 nucleotidesPGA1_c06790 and PGA1_c06800 overlap by 1 nucleotidesPGA1_c06800 and PGA1_c06810 overlap by 1 nucleotides PGA1_c06780: PGA1_c06780 - putative extracellular solute-binding protein, at 697,465 to 699,045 _c06780 PGA1_c06790: PGA1_c06790 - putative peptide ABC transporter, permease protein, at 699,158 to 700,138 _c06790 PGA1_c06800: PGA1_c06800 - dipeptide transport system permease protein DppC, at 700,138 to 701,052 _c06800 PGA1_c06810: PGA1_c06810 - putative dipeptide transport ATP-binding protein DppD, at 701,052 to 702,032 _c06810 Position (kb) 699 700 701Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 698.197 kb on + strand, within PGA1_c06780at 698.218 kb on + strand, within PGA1_c06780at 698.243 kb on + strand, within PGA1_c06780at 698.257 kb on + strand, within PGA1_c06780at 698.260 kb on - strand, within PGA1_c06780at 698.260 kb on - strand, within PGA1_c06780at 698.260 kb on - strand, within PGA1_c06780at 698.260 kb on - strand, within PGA1_c06780at 698.260 kb on - strand, within PGA1_c06780at 698.260 kb on - strand, within PGA1_c06780at 698.269 kb on + strand, within PGA1_c06780at 698.270 kb on - strand, within PGA1_c06780at 698.272 kb on + strand, within PGA1_c06780at 698.272 kb on + strand, within PGA1_c06780at 698.280 kb on - strand, within PGA1_c06780at 698.280 kb on - strand, within PGA1_c06780at 698.302 kb on + strand, within PGA1_c06780at 698.309 kb on - strand, within PGA1_c06780at 698.377 kb on + strand, within PGA1_c06780at 698.498 kb on - strand, within PGA1_c06780at 698.541 kb on + strand, within PGA1_c06780at 698.636 kb on - strand, within PGA1_c06780at 698.643 kb on + strand, within PGA1_c06780at 698.673 kb on + strand, within PGA1_c06780at 698.705 kb on - strand, within PGA1_c06780at 698.720 kb on + strand, within PGA1_c06780at 698.730 kb on + strand, within PGA1_c06780at 698.730 kb on + strand, within PGA1_c06780at 698.730 kb on + strand, within PGA1_c06780at 698.730 kb on + strand, within PGA1_c06780at 698.730 kb on + strand, within PGA1_c06780at 698.735 kb on + strand, within PGA1_c06780at 698.738 kb on - strand, within PGA1_c06780at 698.738 kb on - strand, within PGA1_c06780at 698.738 kb on - strand, within PGA1_c06780at 698.738 kb on - strand, within PGA1_c06780at 698.738 kb on - strand, within PGA1_c06780at 698.738 kb on - strand, within PGA1_c06780at 698.738 kb on - strand, within PGA1_c06780at 698.740 kb on + strand, within PGA1_c06780at 698.740 kb on + strand, within PGA1_c06780at 698.748 kb on - strand, within PGA1_c06780at 698.748 kb on - strand, within PGA1_c06780at 698.772 kb on - strand, within PGA1_c06780at 698.805 kb on - strand, within PGA1_c06780at 698.815 kb on + strand, within PGA1_c06780at 698.844 kb on - strand, within PGA1_c06780at 698.897 kb on - strandat 698.927 kb on + strandat 698.937 kb on - strandat 698.961 kb on + strandat 698.966 kb on + strandat 698.967 kb on - strandat 698.972 kb on - strandat 699.004 kb on + strandat 699.022 kb on - strandat 699.063 kb on + strandat 699.068 kb on + strandat 699.068 kb on + strandat 699.068 kb on + strandat 699.068 kb on + strandat 699.068 kb on + strandat 699.068 kb on + strandat 699.068 kb on + strandat 699.076 kb on - strandat 699.076 kb on - strandat 699.076 kb on - strandat 699.076 kb on - strandat 699.076 kb on - strandat 699.112 kb on + strandat 699.158 kb on + strandat 699.158 kb on + strandat 699.158 kb on + strandat 699.180 kb on + strandat 699.185 kb on + strandat 699.185 kb on + strandat 699.265 kb on - strand, within PGA1_c06790at 699.277 kb on + strand, within PGA1_c06790at 699.287 kb on + strand, within PGA1_c06790at 699.305 kb on - strand, within PGA1_c06790at 699.334 kb on - strand, within PGA1_c06790at 699.349 kb on - strand, within PGA1_c06790at 699.384 kb on - strand, within PGA1_c06790at 699.429 kb on - strand, within PGA1_c06790at 699.429 kb on - strand, within PGA1_c06790at 699.431 kb on - strand, within PGA1_c06790at 699.431 kb on - strand, within PGA1_c06790at 699.431 kb on - strand, within PGA1_c06790at 699.447 kb on + strand, within PGA1_c06790at 699.471 kb on - strand, within PGA1_c06790at 699.508 kb on + strand, within PGA1_c06790at 699.516 kb on - strand, within PGA1_c06790at 699.521 kb on - strand, within PGA1_c06790at 699.578 kb on + strand, within PGA1_c06790at 699.636 kb on + strand, within PGA1_c06790at 699.669 kb on + strand, within PGA1_c06790at 699.678 kb on - strand, within PGA1_c06790at 699.708 kb on + strand, within PGA1_c06790at 699.732 kb on + strand, within PGA1_c06790at 699.738 kb on + strand, within PGA1_c06790at 699.744 kb on + strand, within PGA1_c06790at 699.744 kb on + strand, within PGA1_c06790at 699.744 kb on + strand, within PGA1_c06790at 699.744 kb on + strand, within PGA1_c06790at 699.746 kb on - strand, within PGA1_c06790at 699.752 kb on - strand, within PGA1_c06790at 699.752 kb on - strand, within PGA1_c06790at 699.752 kb on - strand, within PGA1_c06790at 699.822 kb on - strand, within PGA1_c06790at 699.874 kb on + strand, within PGA1_c06790at 699.874 kb on + strand, within PGA1_c06790at 699.877 kb on - strand, within PGA1_c06790at 699.879 kb on + strand, within PGA1_c06790at 699.882 kb on + strand, within PGA1_c06790at 699.882 kb on - strand, within PGA1_c06790at 699.882 kb on - strand, within PGA1_c06790at 699.887 kb on - strand, within PGA1_c06790at 699.908 kb on - strand, within PGA1_c06790at 699.972 kb on + strand, within PGA1_c06790at 699.972 kb on + strand, within PGA1_c06790at 699.972 kb on + strand, within PGA1_c06790at 699.972 kb on + strand, within PGA1_c06790at 699.980 kb on - strand, within PGA1_c06790at 699.982 kb on + strand, within PGA1_c06790at 700.007 kb on + strand, within PGA1_c06790at 700.108 kb on + strandat 700.117 kb on + strandat 700.123 kb on + strandat 700.123 kb on + strandat 700.136 kb on - strandat 700.163 kb on - strandat 700.171 kb on - strandat 700.222 kb on + strandat 700.226 kb on - strandat 700.227 kb on + strandat 700.286 kb on + strand, within PGA1_c06800at 700.286 kb on + strand, within PGA1_c06800at 700.292 kb on + strand, within PGA1_c06800at 700.292 kb on + strand, within PGA1_c06800at 700.292 kb on + strand, within PGA1_c06800at 700.292 kb on + strand, within PGA1_c06800at 700.292 kb on + strand, within PGA1_c06800at 700.292 kb on + strand, within PGA1_c06800at 700.300 kb on - strand, within PGA1_c06800at 700.367 kb on + strand, within PGA1_c06800at 700.367 kb on - strand, within PGA1_c06800at 700.425 kb on + strand, within PGA1_c06800at 700.458 kb on + strand, within PGA1_c06800at 700.467 kb on - strand, within PGA1_c06800at 700.467 kb on - strand, within PGA1_c06800at 700.474 kb on - strand, within PGA1_c06800at 700.540 kb on + strand, within PGA1_c06800at 700.561 kb on - strand, within PGA1_c06800at 700.561 kb on - strand, within PGA1_c06800at 700.595 kb on + strand, within PGA1_c06800at 700.595 kb on - strand, within PGA1_c06800at 700.603 kb on - strand, within PGA1_c06800at 700.603 kb on - strand, within PGA1_c06800at 700.686 kb on + strand, within PGA1_c06800at 700.743 kb on + strand, within PGA1_c06800at 700.784 kb on + strand, within PGA1_c06800at 700.785 kb on + strand, within PGA1_c06800at 700.795 kb on - strand, within PGA1_c06800at 700.827 kb on - strand, within PGA1_c06800at 700.860 kb on - strand, within PGA1_c06800at 700.921 kb on + strand, within PGA1_c06800at 700.921 kb on + strand, within PGA1_c06800at 700.921 kb on + strand, within PGA1_c06800at 700.935 kb on + strand, within PGA1_c06800at 700.945 kb on - strand, within PGA1_c06800at 700.955 kb on - strand, within PGA1_c06800at 700.977 kb on - strandat 700.977 kb on - strandat 700.980 kb on + strandat 700.985 kb on + strandat 700.987 kb on - strandat 700.993 kb on - strandat 700.993 kb on - strandat 701.008 kb on - strandat 701.010 kb on + strandat 701.062 kb on - strandat 701.122 kb on - strandat 701.122 kb on - strandat 701.132 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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698,197 + PGA1_c06780 0.46 +0.5
698,218 + PGA1_c06780 0.48 +0.5
698,243 + PGA1_c06780 0.49 -1.8
698,257 + PGA1_c06780 0.50 +0.3
698,260 - PGA1_c06780 0.50 +0.7
698,260 - PGA1_c06780 0.50 +1.2
698,260 - PGA1_c06780 0.50 +1.9
698,260 - PGA1_c06780 0.50 +0.2
698,260 - PGA1_c06780 0.50 +0.4
698,260 - PGA1_c06780 0.50 -2.1
698,269 + PGA1_c06780 0.51 +1.7
698,270 - PGA1_c06780 0.51 -1.1
698,272 + PGA1_c06780 0.51 -0.0
698,272 + PGA1_c06780 0.51 +0.5
698,280 - PGA1_c06780 0.52 +2.4
698,280 - PGA1_c06780 0.52 +0.5
698,302 + PGA1_c06780 0.53 +1.8
698,309 - PGA1_c06780 0.53 -0.1
698,377 + PGA1_c06780 0.58 +0.6
698,498 - PGA1_c06780 0.65 -1.7
698,541 + PGA1_c06780 0.68 +0.8
698,636 - PGA1_c06780 0.74 -0.7
698,643 + PGA1_c06780 0.75 -1.7
698,673 + PGA1_c06780 0.76 +0.5
698,705 - PGA1_c06780 0.78 -0.5
698,720 + PGA1_c06780 0.79 -2.7
698,730 + PGA1_c06780 0.80 -2.2
698,730 + PGA1_c06780 0.80 -0.5
698,730 + PGA1_c06780 0.80 +1.8
698,730 + PGA1_c06780 0.80 +1.7
698,730 + PGA1_c06780 0.80 +1.3
698,735 + PGA1_c06780 0.80 -1.5
698,738 - PGA1_c06780 0.81 -2.1
698,738 - PGA1_c06780 0.81 -0.5
698,738 - PGA1_c06780 0.81 -1.5
698,738 - PGA1_c06780 0.81 +0.1
698,738 - PGA1_c06780 0.81 -1.5
698,738 - PGA1_c06780 0.81 +0.7
698,738 - PGA1_c06780 0.81 -2.2
698,740 + PGA1_c06780 0.81 +3.7
698,740 + PGA1_c06780 0.81 +1.3
698,748 - PGA1_c06780 0.81 -0.3
698,748 - PGA1_c06780 0.81 -0.5
698,772 - PGA1_c06780 0.83 -2.3
698,805 - PGA1_c06780 0.85 +0.2
698,815 + PGA1_c06780 0.85 +0.8
698,844 - PGA1_c06780 0.87 -2.3
698,897 - -2.5
698,927 + +2.8
698,937 - +0.3
698,961 + -1.6
698,966 + +0.5
698,967 - -2.3
698,972 - -1.1
699,004 + +0.2
699,022 - +0.6
699,063 + -1.5
699,068 + -2.8
699,068 + +0.8
699,068 + +0.2
699,068 + -1.1
699,068 + +0.2
699,068 + +0.8
699,068 + -0.5
699,076 - +1.5
699,076 - -1.1
699,076 - +0.3
699,076 - -1.6
699,076 - -2.2
699,112 + +0.8
699,158 + -1.1
699,158 + -1.1
699,158 + +1.1
699,180 + +1.0
699,185 + -2.4
699,185 + +0.1
699,265 - PGA1_c06790 0.11 +1.5
699,277 + PGA1_c06790 0.12 -2.2
699,287 + PGA1_c06790 0.13 +1.2
699,305 - PGA1_c06790 0.15 -1.1
699,334 - PGA1_c06790 0.18 +2.1
699,349 - PGA1_c06790 0.19 +1.3
699,384 - PGA1_c06790 0.23 +0.7
699,429 - PGA1_c06790 0.28 +0.7
699,429 - PGA1_c06790 0.28 -1.0
699,431 - PGA1_c06790 0.28 +1.5
699,431 - PGA1_c06790 0.28 +0.8
699,431 - PGA1_c06790 0.28 +2.5
699,447 + PGA1_c06790 0.29 -2.1
699,471 - PGA1_c06790 0.32 -2.0
699,508 + PGA1_c06790 0.36 +1.3
699,516 - PGA1_c06790 0.36 +1.3
699,521 - PGA1_c06790 0.37 -0.5
699,578 + PGA1_c06790 0.43 +1.5
699,636 + PGA1_c06790 0.49 +0.7
699,669 + PGA1_c06790 0.52 +2.4
699,678 - PGA1_c06790 0.53 +0.5
699,708 + PGA1_c06790 0.56 -0.2
699,732 + PGA1_c06790 0.59 -1.7
699,738 + PGA1_c06790 0.59 -0.4
699,744 + PGA1_c06790 0.60 -1.7
699,744 + PGA1_c06790 0.60 +1.8
699,744 + PGA1_c06790 0.60 -1.1
699,744 + PGA1_c06790 0.60 -0.2
699,746 - PGA1_c06790 0.60 -0.0
699,752 - PGA1_c06790 0.61 -2.1
699,752 - PGA1_c06790 0.61 +1.1
699,752 - PGA1_c06790 0.61 -2.8
699,822 - PGA1_c06790 0.68 +0.2
699,874 + PGA1_c06790 0.73 +0.3
699,874 + PGA1_c06790 0.73 +0.6
699,877 - PGA1_c06790 0.73 +1.9
699,879 + PGA1_c06790 0.73 -1.5
699,882 + PGA1_c06790 0.74 +1.0
699,882 - PGA1_c06790 0.74 +1.6
699,882 - PGA1_c06790 0.74 -0.1
699,887 - PGA1_c06790 0.74 -1.7
699,908 - PGA1_c06790 0.76 +0.7
699,972 + PGA1_c06790 0.83 +1.5
699,972 + PGA1_c06790 0.83 +1.2
699,972 + PGA1_c06790 0.83 -0.6
699,972 + PGA1_c06790 0.83 +0.9
699,980 - PGA1_c06790 0.84 +0.8
699,982 + PGA1_c06790 0.84 +0.7
700,007 + PGA1_c06790 0.87 -0.2
700,108 + -0.1
700,117 + +2.9
700,123 + +0.2
700,123 + -0.5
700,136 - -2.0
700,163 - +0.0
700,171 - +0.1
700,222 + -2.6
700,226 - -1.0
700,227 + +2.3
700,286 + PGA1_c06800 0.16 +0.5
700,286 + PGA1_c06800 0.16 +1.0
700,292 + PGA1_c06800 0.17 -1.4
700,292 + PGA1_c06800 0.17 -0.8
700,292 + PGA1_c06800 0.17 -1.7
700,292 + PGA1_c06800 0.17 +0.7
700,292 + PGA1_c06800 0.17 -2.8
700,292 + PGA1_c06800 0.17 -2.5
700,300 - PGA1_c06800 0.18 +1.4
700,367 + PGA1_c06800 0.25 +1.1
700,367 - PGA1_c06800 0.25 -2.2
700,425 + PGA1_c06800 0.31 -2.1
700,458 + PGA1_c06800 0.35 -1.7
700,467 - PGA1_c06800 0.36 +0.7
700,467 - PGA1_c06800 0.36 +1.3
700,474 - PGA1_c06800 0.37 +1.2
700,540 + PGA1_c06800 0.44 -1.5
700,561 - PGA1_c06800 0.46 +1.2
700,561 - PGA1_c06800 0.46 -0.1
700,595 + PGA1_c06800 0.50 +0.2
700,595 - PGA1_c06800 0.50 +0.1
700,603 - PGA1_c06800 0.51 -2.1
700,603 - PGA1_c06800 0.51 -2.4
700,686 + PGA1_c06800 0.60 +0.3
700,743 + PGA1_c06800 0.66 +1.5
700,784 + PGA1_c06800 0.71 +0.3
700,785 + PGA1_c06800 0.71 -1.2
700,795 - PGA1_c06800 0.72 +0.5
700,827 - PGA1_c06800 0.75 -2.2
700,860 - PGA1_c06800 0.79 +1.1
700,921 + PGA1_c06800 0.86 +0.7
700,921 + PGA1_c06800 0.86 -2.5
700,921 + PGA1_c06800 0.86 +1.1
700,935 + PGA1_c06800 0.87 +0.3
700,945 - PGA1_c06800 0.88 -1.3
700,955 - PGA1_c06800 0.89 -2.3
700,977 - +2.3
700,977 - -1.8
700,980 + +0.8
700,985 + -0.1
700,987 - +0.2
700,993 - +0.6
700,993 - +1.2
701,008 - -0.4
701,010 + +0.0
701,062 - +0.3
701,122 - -1.3
701,122 - +0.4
701,132 + +1.5

Or see this region's nucleotide sequence