Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05120

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05110 and PGA1_c05120 overlap by 10 nucleotidesPGA1_c05120 and PGA1_c05130 overlap by 1 nucleotides PGA1_c05110: PGA1_c05110 - dihydrodipicolinate synthase domain-containing protein, at 503,564 to 504,523 _c05110 PGA1_c05120: PGA1_c05120 - 4-hydroxyproline epimerase, at 504,514 to 505,458 _c05120 PGA1_c05130: PGA1_c05130 - aldehyde dehydrogenase, at 505,458 to 506,888 _c05130 Position (kb) 504 505 506Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 503.518 kb on - strandat 503.544 kb on + strandat 503.555 kb on + strandat 503.571 kb on + strandat 503.607 kb on - strandat 503.619 kb on - strandat 503.624 kb on - strandat 503.690 kb on - strand, within PGA1_c05110at 503.692 kb on + strand, within PGA1_c05110at 503.692 kb on + strand, within PGA1_c05110at 503.692 kb on + strand, within PGA1_c05110at 503.692 kb on + strand, within PGA1_c05110at 503.700 kb on - strand, within PGA1_c05110at 503.700 kb on - strand, within PGA1_c05110at 503.700 kb on - strand, within PGA1_c05110at 503.816 kb on - strand, within PGA1_c05110at 503.816 kb on - strand, within PGA1_c05110at 503.816 kb on - strand, within PGA1_c05110at 503.843 kb on + strand, within PGA1_c05110at 503.862 kb on + strand, within PGA1_c05110at 503.862 kb on + strand, within PGA1_c05110at 503.870 kb on - strand, within PGA1_c05110at 503.870 kb on - strand, within PGA1_c05110at 503.870 kb on - strand, within PGA1_c05110at 503.870 kb on - strand, within PGA1_c05110at 503.943 kb on - strand, within PGA1_c05110at 503.974 kb on - strand, within PGA1_c05110at 504.022 kb on + strand, within PGA1_c05110at 504.048 kb on + strand, within PGA1_c05110at 504.048 kb on + strand, within PGA1_c05110at 504.048 kb on + strand, within PGA1_c05110at 504.056 kb on + strand, within PGA1_c05110at 504.056 kb on - strand, within PGA1_c05110at 504.056 kb on - strand, within PGA1_c05110at 504.056 kb on - strand, within PGA1_c05110at 504.077 kb on - strand, within PGA1_c05110at 504.104 kb on + strand, within PGA1_c05110at 504.104 kb on + strand, within PGA1_c05110at 504.147 kb on + strand, within PGA1_c05110at 504.157 kb on - strand, within PGA1_c05110at 504.221 kb on + strand, within PGA1_c05110at 504.245 kb on - strand, within PGA1_c05110at 504.292 kb on + strand, within PGA1_c05110at 504.292 kb on + strand, within PGA1_c05110at 504.313 kb on + strand, within PGA1_c05110at 504.321 kb on + strand, within PGA1_c05110at 504.321 kb on + strand, within PGA1_c05110at 504.329 kb on - strand, within PGA1_c05110at 504.383 kb on + strand, within PGA1_c05110at 504.471 kb on - strandat 504.474 kb on + strandat 504.474 kb on + strandat 504.482 kb on + strandat 504.490 kb on - strandat 504.490 kb on - strandat 504.554 kb on + strandat 504.562 kb on - strandat 504.644 kb on + strand, within PGA1_c05120at 504.652 kb on - strand, within PGA1_c05120at 504.652 kb on - strand, within PGA1_c05120at 504.717 kb on - strand, within PGA1_c05120at 504.787 kb on - strand, within PGA1_c05120at 504.805 kb on + strand, within PGA1_c05120at 504.813 kb on - strand, within PGA1_c05120at 504.815 kb on + strand, within PGA1_c05120at 504.857 kb on + strand, within PGA1_c05120at 504.983 kb on - strand, within PGA1_c05120at 505.004 kb on + strand, within PGA1_c05120at 505.010 kb on - strand, within PGA1_c05120at 505.012 kb on - strand, within PGA1_c05120at 505.022 kb on + strand, within PGA1_c05120at 505.029 kb on - strand, within PGA1_c05120at 505.032 kb on + strand, within PGA1_c05120at 505.073 kb on + strand, within PGA1_c05120at 505.075 kb on - strand, within PGA1_c05120at 505.078 kb on + strand, within PGA1_c05120at 505.085 kb on - strand, within PGA1_c05120at 505.085 kb on - strand, within PGA1_c05120at 505.101 kb on - strand, within PGA1_c05120at 505.118 kb on + strand, within PGA1_c05120at 505.142 kb on + strand, within PGA1_c05120at 505.147 kb on + strand, within PGA1_c05120at 505.147 kb on + strand, within PGA1_c05120at 505.147 kb on + strand, within PGA1_c05120at 505.147 kb on + strand, within PGA1_c05120at 505.150 kb on - strand, within PGA1_c05120at 505.155 kb on - strand, within PGA1_c05120at 505.155 kb on - strand, within PGA1_c05120at 505.155 kb on - strand, within PGA1_c05120at 505.155 kb on - strand, within PGA1_c05120at 505.155 kb on - strand, within PGA1_c05120at 505.155 kb on - strand, within PGA1_c05120at 505.155 kb on - strand, within PGA1_c05120at 505.198 kb on + strand, within PGA1_c05120at 505.198 kb on + strand, within PGA1_c05120at 505.206 kb on - strand, within PGA1_c05120at 505.206 kb on - strand, within PGA1_c05120at 505.206 kb on - strand, within PGA1_c05120at 505.206 kb on - strand, within PGA1_c05120at 505.206 kb on - strand, within PGA1_c05120at 505.286 kb on + strand, within PGA1_c05120at 505.286 kb on + strand, within PGA1_c05120at 505.286 kb on + strand, within PGA1_c05120at 505.313 kb on + strand, within PGA1_c05120at 505.331 kb on + strand, within PGA1_c05120at 505.420 kb on - strandat 505.442 kb on + strandat 505.447 kb on + strandat 505.450 kb on - strandat 505.497 kb on - strandat 505.497 kb on - strandat 505.498 kb on - strandat 505.550 kb on - strandat 505.611 kb on + strand, within PGA1_c05130at 505.613 kb on + strand, within PGA1_c05130at 505.619 kb on - strand, within PGA1_c05130at 505.619 kb on - strand, within PGA1_c05130at 505.645 kb on + strand, within PGA1_c05130at 505.655 kb on + strand, within PGA1_c05130at 505.698 kb on - strand, within PGA1_c05130at 505.698 kb on - strand, within PGA1_c05130at 505.724 kb on + strand, within PGA1_c05130at 505.724 kb on + strand, within PGA1_c05130at 505.732 kb on - strand, within PGA1_c05130at 505.732 kb on - strand, within PGA1_c05130at 505.792 kb on + strand, within PGA1_c05130at 505.813 kb on + strand, within PGA1_c05130at 505.830 kb on + strand, within PGA1_c05130at 505.838 kb on - strand, within PGA1_c05130at 505.881 kb on + strand, within PGA1_c05130at 505.938 kb on + strand, within PGA1_c05130at 505.938 kb on + strand, within PGA1_c05130at 505.943 kb on + strand, within PGA1_c05130at 505.943 kb on + strand, within PGA1_c05130at 505.946 kb on - strand, within PGA1_c05130at 505.946 kb on - strand, within PGA1_c05130at 506.074 kb on + strand, within PGA1_c05130at 506.077 kb on - strand, within PGA1_c05130at 506.088 kb on - strand, within PGA1_c05130at 506.106 kb on - strand, within PGA1_c05130at 506.187 kb on + strand, within PGA1_c05130at 506.189 kb on - strand, within PGA1_c05130at 506.235 kb on + strand, within PGA1_c05130at 506.243 kb on - strand, within PGA1_c05130at 506.243 kb on - strand, within PGA1_c05130at 506.243 kb on - strand, within PGA1_c05130at 506.286 kb on + strand, within PGA1_c05130at 506.286 kb on + strand, within PGA1_c05130at 506.291 kb on + strand, within PGA1_c05130at 506.294 kb on - strand, within PGA1_c05130at 506.294 kb on - strand, within PGA1_c05130at 506.299 kb on - strand, within PGA1_c05130at 506.299 kb on - strand, within PGA1_c05130at 506.299 kb on - strand, within PGA1_c05130at 506.299 kb on - strand, within PGA1_c05130at 506.299 kb on - strand, within PGA1_c05130at 506.300 kb on - strand, within PGA1_c05130at 506.374 kb on - strand, within PGA1_c05130at 506.391 kb on + strand, within PGA1_c05130at 506.416 kb on + strand, within PGA1_c05130

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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503,518 - -2.4
503,544 + +1.1
503,555 + -1.9
503,571 + -1.3
503,607 - +0.0
503,619 - -2.2
503,624 - +1.1
503,690 - PGA1_c05110 0.13 -0.8
503,692 + PGA1_c05110 0.13 -0.4
503,692 + PGA1_c05110 0.13 -0.2
503,692 + PGA1_c05110 0.13 -1.9
503,692 + PGA1_c05110 0.13 +0.1
503,700 - PGA1_c05110 0.14 -2.6
503,700 - PGA1_c05110 0.14 +0.5
503,700 - PGA1_c05110 0.14 +1.3
503,816 - PGA1_c05110 0.26 -2.1
503,816 - PGA1_c05110 0.26 -0.7
503,816 - PGA1_c05110 0.26 -1.9
503,843 + PGA1_c05110 0.29 +0.1
503,862 + PGA1_c05110 0.31 -0.7
503,862 + PGA1_c05110 0.31 -1.4
503,870 - PGA1_c05110 0.32 +1.8
503,870 - PGA1_c05110 0.32 -0.6
503,870 - PGA1_c05110 0.32 +0.0
503,870 - PGA1_c05110 0.32 -1.0
503,943 - PGA1_c05110 0.39 -0.8
503,974 - PGA1_c05110 0.43 +1.2
504,022 + PGA1_c05110 0.48 -1.8
504,048 + PGA1_c05110 0.50 -3.4
504,048 + PGA1_c05110 0.50 +0.8
504,048 + PGA1_c05110 0.50 -1.4
504,056 + PGA1_c05110 0.51 +0.6
504,056 - PGA1_c05110 0.51 -1.3
504,056 - PGA1_c05110 0.51 +2.2
504,056 - PGA1_c05110 0.51 -0.7
504,077 - PGA1_c05110 0.53 +1.3
504,104 + PGA1_c05110 0.56 -1.2
504,104 + PGA1_c05110 0.56 +0.6
504,147 + PGA1_c05110 0.61 -1.9
504,157 - PGA1_c05110 0.62 +2.4
504,221 + PGA1_c05110 0.68 +0.2
504,245 - PGA1_c05110 0.71 -1.0
504,292 + PGA1_c05110 0.76 -0.5
504,292 + PGA1_c05110 0.76 -1.4
504,313 + PGA1_c05110 0.78 -0.8
504,321 + PGA1_c05110 0.79 -2.3
504,321 + PGA1_c05110 0.79 -0.4
504,329 - PGA1_c05110 0.80 +0.2
504,383 + PGA1_c05110 0.85 +1.4
504,471 - +0.1
504,474 + -0.2
504,474 + +0.1
504,482 + +1.7
504,490 - -2.5
504,490 - -0.6
504,554 + -1.9
504,562 - +0.8
504,644 + PGA1_c05120 0.14 +1.3
504,652 - PGA1_c05120 0.15 +0.3
504,652 - PGA1_c05120 0.15 +0.9
504,717 - PGA1_c05120 0.21 +1.8
504,787 - PGA1_c05120 0.29 +0.7
504,805 + PGA1_c05120 0.31 +0.0
504,813 - PGA1_c05120 0.32 -1.7
504,815 + PGA1_c05120 0.32 +1.0
504,857 + PGA1_c05120 0.36 +0.8
504,983 - PGA1_c05120 0.50 +0.6
505,004 + PGA1_c05120 0.52 -0.8
505,010 - PGA1_c05120 0.52 -0.2
505,012 - PGA1_c05120 0.53 +1.2
505,022 + PGA1_c05120 0.54 +1.6
505,029 - PGA1_c05120 0.54 +0.9
505,032 + PGA1_c05120 0.55 +1.1
505,073 + PGA1_c05120 0.59 +0.9
505,075 - PGA1_c05120 0.59 -3.2
505,078 + PGA1_c05120 0.60 +0.1
505,085 - PGA1_c05120 0.60 +0.6
505,085 - PGA1_c05120 0.60 +2.4
505,101 - PGA1_c05120 0.62 -0.2
505,118 + PGA1_c05120 0.64 -0.0
505,142 + PGA1_c05120 0.66 +0.8
505,147 + PGA1_c05120 0.67 +0.7
505,147 + PGA1_c05120 0.67 +1.2
505,147 + PGA1_c05120 0.67 +0.2
505,147 + PGA1_c05120 0.67 +1.6
505,150 - PGA1_c05120 0.67 +0.4
505,155 - PGA1_c05120 0.68 -1.4
505,155 - PGA1_c05120 0.68 -0.2
505,155 - PGA1_c05120 0.68 +2.3
505,155 - PGA1_c05120 0.68 +0.6
505,155 - PGA1_c05120 0.68 -0.3
505,155 - PGA1_c05120 0.68 +3.1
505,155 - PGA1_c05120 0.68 +0.6
505,198 + PGA1_c05120 0.72 +1.8
505,198 + PGA1_c05120 0.72 +0.2
505,206 - PGA1_c05120 0.73 -0.2
505,206 - PGA1_c05120 0.73 -1.4
505,206 - PGA1_c05120 0.73 +0.8
505,206 - PGA1_c05120 0.73 -2.0
505,206 - PGA1_c05120 0.73 -1.9
505,286 + PGA1_c05120 0.82 +0.5
505,286 + PGA1_c05120 0.82 +1.5
505,286 + PGA1_c05120 0.82 -2.1
505,313 + PGA1_c05120 0.85 +0.5
505,331 + PGA1_c05120 0.86 +0.7
505,420 - +1.2
505,442 + -0.4
505,447 + +1.4
505,450 - -0.4
505,497 - -0.9
505,497 - -0.5
505,498 - +1.5
505,550 - +0.5
505,611 + PGA1_c05130 0.11 +0.9
505,613 + PGA1_c05130 0.11 -1.2
505,619 - PGA1_c05130 0.11 -0.0
505,619 - PGA1_c05130 0.11 +1.6
505,645 + PGA1_c05130 0.13 -0.6
505,655 + PGA1_c05130 0.14 +0.8
505,698 - PGA1_c05130 0.17 -0.4
505,698 - PGA1_c05130 0.17 -1.9
505,724 + PGA1_c05130 0.19 +1.5
505,724 + PGA1_c05130 0.19 +0.4
505,732 - PGA1_c05130 0.19 +1.6
505,732 - PGA1_c05130 0.19 -1.2
505,792 + PGA1_c05130 0.23 -1.4
505,813 + PGA1_c05130 0.25 -1.2
505,830 + PGA1_c05130 0.26 -0.0
505,838 - PGA1_c05130 0.27 +1.1
505,881 + PGA1_c05130 0.30 -1.4
505,938 + PGA1_c05130 0.34 +2.4
505,938 + PGA1_c05130 0.34 +1.3
505,943 + PGA1_c05130 0.34 +2.2
505,943 + PGA1_c05130 0.34 +0.3
505,946 - PGA1_c05130 0.34 +0.5
505,946 - PGA1_c05130 0.34 +0.3
506,074 + PGA1_c05130 0.43 -1.6
506,077 - PGA1_c05130 0.43 -1.2
506,088 - PGA1_c05130 0.44 +0.3
506,106 - PGA1_c05130 0.45 +1.2
506,187 + PGA1_c05130 0.51 -1.1
506,189 - PGA1_c05130 0.51 -3.5
506,235 + PGA1_c05130 0.54 -1.6
506,243 - PGA1_c05130 0.55 +0.3
506,243 - PGA1_c05130 0.55 +0.0
506,243 - PGA1_c05130 0.55 -1.0
506,286 + PGA1_c05130 0.58 +0.6
506,286 + PGA1_c05130 0.58 +0.5
506,291 + PGA1_c05130 0.58 -0.6
506,294 - PGA1_c05130 0.58 -2.3
506,294 - PGA1_c05130 0.58 +2.0
506,299 - PGA1_c05130 0.59 -2.0
506,299 - PGA1_c05130 0.59 +0.7
506,299 - PGA1_c05130 0.59 +1.0
506,299 - PGA1_c05130 0.59 +1.0
506,299 - PGA1_c05130 0.59 +0.6
506,300 - PGA1_c05130 0.59 -0.3
506,374 - PGA1_c05130 0.64 +1.6
506,391 + PGA1_c05130 0.65 +0.8
506,416 + PGA1_c05130 0.67 -0.4

Or see this region's nucleotide sequence