Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04710

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04700 and PGA1_c04710 are separated by 67 nucleotidesPGA1_c04710 and PGA1_c04720 are separated by 205 nucleotidesPGA1_c04720 and PGA1_c04730 are separated by 11 nucleotides PGA1_c04700: PGA1_c04700 - hypothetical protein, at 462,069 to 463,013 _c04700 PGA1_c04710: PGA1_c04710 - (dimethylallyl)adenosine tRNA methylthiotransferase MiaB, at 463,081 to 464,403 _c04710 PGA1_c04720: PGA1_c04720 - outer membrane protein OmpA-domain containing protein, at 464,609 to 465,160 _c04720 PGA1_c04730: PGA1_c04730 - hypothetical protein, at 465,172 to 465,474 _c04730 Position (kb) 463 464 465Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 462.085 kb on + strandat 462.085 kb on + strandat 462.093 kb on - strandat 462.139 kb on + strandat 462.164 kb on - strand, within PGA1_c04700at 462.197 kb on + strand, within PGA1_c04700at 462.197 kb on + strand, within PGA1_c04700at 462.213 kb on - strand, within PGA1_c04700at 462.237 kb on - strand, within PGA1_c04700at 462.252 kb on + strand, within PGA1_c04700at 462.260 kb on - strand, within PGA1_c04700at 462.260 kb on - strand, within PGA1_c04700at 462.261 kb on + strand, within PGA1_c04700at 462.267 kb on - strand, within PGA1_c04700at 462.269 kb on - strand, within PGA1_c04700at 462.272 kb on - strand, within PGA1_c04700at 462.272 kb on - strand, within PGA1_c04700at 462.274 kb on - strand, within PGA1_c04700at 462.274 kb on - strand, within PGA1_c04700at 462.275 kb on + strand, within PGA1_c04700at 462.305 kb on + strand, within PGA1_c04700at 462.481 kb on - strand, within PGA1_c04700at 462.543 kb on + strand, within PGA1_c04700at 462.551 kb on - strand, within PGA1_c04700at 462.561 kb on + strand, within PGA1_c04700at 462.603 kb on - strand, within PGA1_c04700at 462.605 kb on - strand, within PGA1_c04700at 462.651 kb on - strand, within PGA1_c04700at 462.651 kb on - strand, within PGA1_c04700at 462.651 kb on - strand, within PGA1_c04700at 462.653 kb on + strand, within PGA1_c04700at 462.763 kb on - strand, within PGA1_c04700at 462.789 kb on - strand, within PGA1_c04700at 462.789 kb on - strand, within PGA1_c04700at 462.812 kb on + strand, within PGA1_c04700at 462.815 kb on - strand, within PGA1_c04700at 462.824 kb on + strand, within PGA1_c04700at 462.824 kb on + strand, within PGA1_c04700at 462.830 kb on + strand, within PGA1_c04700at 462.832 kb on - strand, within PGA1_c04700at 462.843 kb on - strand, within PGA1_c04700at 462.847 kb on + strand, within PGA1_c04700at 462.855 kb on - strand, within PGA1_c04700at 462.872 kb on - strand, within PGA1_c04700at 462.920 kb on + strandat 462.941 kb on - strandat 462.969 kb on - strandat 463.000 kb on + strandat 463.027 kb on + strandat 463.075 kb on + strandat 463.110 kb on + strandat 463.118 kb on - strandat 463.146 kb on + strandat 463.168 kb on + strandat 463.176 kb on - strandat 463.218 kb on + strand, within PGA1_c04710at 463.226 kb on + strand, within PGA1_c04710at 463.227 kb on - strand, within PGA1_c04710at 463.270 kb on - strand, within PGA1_c04710at 463.270 kb on - strand, within PGA1_c04710at 463.275 kb on - strand, within PGA1_c04710at 463.293 kb on - strand, within PGA1_c04710at 463.331 kb on + strand, within PGA1_c04710at 463.331 kb on + strand, within PGA1_c04710at 463.445 kb on + strand, within PGA1_c04710at 463.452 kb on - strand, within PGA1_c04710at 463.453 kb on + strand, within PGA1_c04710at 463.453 kb on - strand, within PGA1_c04710at 463.453 kb on - strand, within PGA1_c04710at 463.453 kb on - strand, within PGA1_c04710at 463.453 kb on - strand, within PGA1_c04710at 463.453 kb on - strand, within PGA1_c04710at 463.520 kb on - strand, within PGA1_c04710at 463.520 kb on - strand, within PGA1_c04710at 463.523 kb on + strand, within PGA1_c04710at 463.529 kb on - strand, within PGA1_c04710at 463.584 kb on + strand, within PGA1_c04710at 463.592 kb on - strand, within PGA1_c04710at 463.639 kb on + strand, within PGA1_c04710at 463.639 kb on + strand, within PGA1_c04710at 463.655 kb on + strand, within PGA1_c04710at 463.655 kb on + strand, within PGA1_c04710at 463.733 kb on + strand, within PGA1_c04710at 463.780 kb on - strand, within PGA1_c04710at 463.837 kb on + strand, within PGA1_c04710at 463.872 kb on - strand, within PGA1_c04710at 463.874 kb on + strand, within PGA1_c04710at 463.884 kb on + strand, within PGA1_c04710at 463.892 kb on - strand, within PGA1_c04710at 463.916 kb on + strand, within PGA1_c04710at 463.917 kb on - strand, within PGA1_c04710at 464.045 kb on + strand, within PGA1_c04710at 464.052 kb on - strand, within PGA1_c04710at 464.053 kb on - strand, within PGA1_c04710at 464.053 kb on - strand, within PGA1_c04710at 464.107 kb on - strand, within PGA1_c04710at 464.206 kb on + strand, within PGA1_c04710at 464.214 kb on - strand, within PGA1_c04710at 464.214 kb on - strand, within PGA1_c04710at 464.216 kb on + strand, within PGA1_c04710at 464.224 kb on - strand, within PGA1_c04710at 464.286 kb on - strandat 464.294 kb on + strandat 464.355 kb on + strandat 464.530 kb on - strandat 464.530 kb on - strandat 464.530 kb on - strandat 464.533 kb on + strandat 464.533 kb on + strandat 464.541 kb on - strandat 464.541 kb on - strandat 464.541 kb on - strandat 464.556 kb on + strandat 464.577 kb on + strandat 464.577 kb on + strandat 464.579 kb on - strandat 464.584 kb on - strandat 464.599 kb on + strandat 464.607 kb on - strandat 464.630 kb on + strandat 464.630 kb on + strandat 464.630 kb on + strandat 464.630 kb on + strandat 464.638 kb on - strandat 464.638 kb on - strandat 464.638 kb on - strandat 464.666 kb on - strand, within PGA1_c04720at 464.666 kb on - strand, within PGA1_c04720at 464.688 kb on + strand, within PGA1_c04720at 464.696 kb on - strand, within PGA1_c04720at 464.717 kb on - strand, within PGA1_c04720at 464.730 kb on - strand, within PGA1_c04720at 464.730 kb on - strand, within PGA1_c04720at 464.757 kb on - strand, within PGA1_c04720at 464.778 kb on + strand, within PGA1_c04720at 464.833 kb on + strand, within PGA1_c04720at 464.841 kb on + strand, within PGA1_c04720at 464.868 kb on - strand, within PGA1_c04720at 464.897 kb on + strand, within PGA1_c04720at 464.905 kb on - strand, within PGA1_c04720at 464.905 kb on - strand, within PGA1_c04720at 464.905 kb on - strand, within PGA1_c04720at 464.905 kb on - strand, within PGA1_c04720at 464.905 kb on - strand, within PGA1_c04720at 464.976 kb on + strand, within PGA1_c04720at 464.984 kb on - strand, within PGA1_c04720at 465.025 kb on + strand, within PGA1_c04720at 465.057 kb on + strand, within PGA1_c04720at 465.065 kb on - strand, within PGA1_c04720at 465.070 kb on + strand, within PGA1_c04720at 465.078 kb on - strand, within PGA1_c04720at 465.130 kb on - strandat 465.154 kb on + strandat 465.162 kb on - strandat 465.162 kb on - strandat 465.164 kb on + strandat 465.195 kb on + strandat 465.201 kb on - strandat 465.267 kb on + strand, within PGA1_c04730at 465.282 kb on - strand, within PGA1_c04730at 465.287 kb on - strand, within PGA1_c04730at 465.350 kb on + strand, within PGA1_c04730at 465.401 kb on + strand, within PGA1_c04730

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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462,085 + +1.6
462,085 + -2.0
462,093 - -3.1
462,139 + +2.0
462,164 - PGA1_c04700 0.10 -1.4
462,197 + PGA1_c04700 0.14 +1.6
462,197 + PGA1_c04700 0.14 +3.2
462,213 - PGA1_c04700 0.15 -0.6
462,237 - PGA1_c04700 0.18 +0.4
462,252 + PGA1_c04700 0.19 +1.3
462,260 - PGA1_c04700 0.20 -1.0
462,260 - PGA1_c04700 0.20 -1.2
462,261 + PGA1_c04700 0.20 +0.2
462,267 - PGA1_c04700 0.21 -0.7
462,269 - PGA1_c04700 0.21 +0.1
462,272 - PGA1_c04700 0.21 -0.4
462,272 - PGA1_c04700 0.21 +2.6
462,274 - PGA1_c04700 0.22 -0.3
462,274 - PGA1_c04700 0.22 -0.1
462,275 + PGA1_c04700 0.22 -1.0
462,305 + PGA1_c04700 0.25 -0.4
462,481 - PGA1_c04700 0.44 -0.0
462,543 + PGA1_c04700 0.50 -1.1
462,551 - PGA1_c04700 0.51 +2.2
462,561 + PGA1_c04700 0.52 -0.0
462,603 - PGA1_c04700 0.57 -0.6
462,605 - PGA1_c04700 0.57 +2.2
462,651 - PGA1_c04700 0.62 -0.1
462,651 - PGA1_c04700 0.62 +1.2
462,651 - PGA1_c04700 0.62 +0.2
462,653 + PGA1_c04700 0.62 -1.9
462,763 - PGA1_c04700 0.73 +1.1
462,789 - PGA1_c04700 0.76 +0.3
462,789 - PGA1_c04700 0.76 +0.8
462,812 + PGA1_c04700 0.79 +0.6
462,815 - PGA1_c04700 0.79 +0.1
462,824 + PGA1_c04700 0.80 +0.4
462,824 + PGA1_c04700 0.80 +0.4
462,830 + PGA1_c04700 0.81 -0.0
462,832 - PGA1_c04700 0.81 +0.6
462,843 - PGA1_c04700 0.82 +1.1
462,847 + PGA1_c04700 0.82 +1.0
462,855 - PGA1_c04700 0.83 +0.4
462,872 - PGA1_c04700 0.85 +0.3
462,920 + +2.2
462,941 - +1.0
462,969 - +0.7
463,000 + -2.1
463,027 + +0.6
463,075 + -0.1
463,110 + -0.0
463,118 - +1.2
463,146 + +0.6
463,168 + -1.9
463,176 - +0.8
463,218 + PGA1_c04710 0.10 +0.7
463,226 + PGA1_c04710 0.11 -0.2
463,227 - PGA1_c04710 0.11 -0.7
463,270 - PGA1_c04710 0.14 +0.6
463,270 - PGA1_c04710 0.14 -2.2
463,275 - PGA1_c04710 0.15 +0.5
463,293 - PGA1_c04710 0.16 +0.3
463,331 + PGA1_c04710 0.19 +1.7
463,331 + PGA1_c04710 0.19 -1.4
463,445 + PGA1_c04710 0.28 +0.2
463,452 - PGA1_c04710 0.28 +0.9
463,453 + PGA1_c04710 0.28 -1.2
463,453 - PGA1_c04710 0.28 +0.1
463,453 - PGA1_c04710 0.28 +1.1
463,453 - PGA1_c04710 0.28 -3.8
463,453 - PGA1_c04710 0.28 -1.2
463,453 - PGA1_c04710 0.28 -0.0
463,520 - PGA1_c04710 0.33 +0.4
463,520 - PGA1_c04710 0.33 +2.2
463,523 + PGA1_c04710 0.33 +0.2
463,529 - PGA1_c04710 0.34 +0.6
463,584 + PGA1_c04710 0.38 +0.8
463,592 - PGA1_c04710 0.39 -0.3
463,639 + PGA1_c04710 0.42 -1.0
463,639 + PGA1_c04710 0.42 +0.1
463,655 + PGA1_c04710 0.43 +0.5
463,655 + PGA1_c04710 0.43 +1.5
463,733 + PGA1_c04710 0.49 -0.4
463,780 - PGA1_c04710 0.53 +1.1
463,837 + PGA1_c04710 0.57 -3.0
463,872 - PGA1_c04710 0.60 -3.5
463,874 + PGA1_c04710 0.60 +0.7
463,884 + PGA1_c04710 0.61 -2.0
463,892 - PGA1_c04710 0.61 +1.6
463,916 + PGA1_c04710 0.63 +1.3
463,917 - PGA1_c04710 0.63 +0.8
464,045 + PGA1_c04710 0.73 -0.0
464,052 - PGA1_c04710 0.73 -3.0
464,053 - PGA1_c04710 0.73 -1.4
464,053 - PGA1_c04710 0.73 +1.2
464,107 - PGA1_c04710 0.78 +0.9
464,206 + PGA1_c04710 0.85 -2.4
464,214 - PGA1_c04710 0.86 -0.1
464,214 - PGA1_c04710 0.86 -0.0
464,216 + PGA1_c04710 0.86 +1.1
464,224 - PGA1_c04710 0.86 -2.5
464,286 - -2.3
464,294 + -0.1
464,355 + -0.2
464,530 - -0.0
464,530 - +0.6
464,530 - +0.9
464,533 + -0.1
464,533 + -1.2
464,541 - -2.4
464,541 - -0.9
464,541 - -2.8
464,556 + -1.2
464,577 + +0.4
464,577 + -1.2
464,579 - +1.4
464,584 - -0.8
464,599 + -0.6
464,607 - +1.9
464,630 + +0.1
464,630 + +0.4
464,630 + -1.8
464,630 + +1.8
464,638 - +0.8
464,638 - +0.7
464,638 - -1.4
464,666 - PGA1_c04720 0.10 +0.4
464,666 - PGA1_c04720 0.10 +0.8
464,688 + PGA1_c04720 0.14 +0.4
464,696 - PGA1_c04720 0.16 +0.7
464,717 - PGA1_c04720 0.20 +0.2
464,730 - PGA1_c04720 0.22 -1.8
464,730 - PGA1_c04720 0.22 -0.1
464,757 - PGA1_c04720 0.27 -2.0
464,778 + PGA1_c04720 0.31 -1.3
464,833 + PGA1_c04720 0.41 +0.6
464,841 + PGA1_c04720 0.42 -2.4
464,868 - PGA1_c04720 0.47 -0.4
464,897 + PGA1_c04720 0.52 -3.5
464,905 - PGA1_c04720 0.54 +0.2
464,905 - PGA1_c04720 0.54 -1.2
464,905 - PGA1_c04720 0.54 -2.0
464,905 - PGA1_c04720 0.54 -0.8
464,905 - PGA1_c04720 0.54 -0.2
464,976 + PGA1_c04720 0.66 +0.3
464,984 - PGA1_c04720 0.68 +0.3
465,025 + PGA1_c04720 0.75 -1.1
465,057 + PGA1_c04720 0.81 +1.6
465,065 - PGA1_c04720 0.83 +1.0
465,070 + PGA1_c04720 0.84 +0.5
465,078 - PGA1_c04720 0.85 -1.1
465,130 - -2.1
465,154 + -2.8
465,162 - +1.7
465,162 - +0.4
465,164 + +1.1
465,195 + -1.5
465,201 - -0.9
465,267 + PGA1_c04730 0.31 +0.3
465,282 - PGA1_c04730 0.36 +1.2
465,287 - PGA1_c04730 0.38 -1.0
465,350 + PGA1_c04730 0.59 -0.0
465,401 + PGA1_c04730 0.76 -0.6

Or see this region's nucleotide sequence