Experiment: m.b. syringaldehyde 0.3125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3306 and HP15_3307 are separated by 82 nucleotides HP15_3307 and HP15_3308 are separated by 265 nucleotides HP15_3308 and HP15_3309 are separated by 247 nucleotides
HP15_3306: HP15_3306 - molybdenum ABC transporter, ATP-binding protein, at 3,463,310 to 3,464,392
_3306
HP15_3307: HP15_3307 - transcriptional regulator, Crp/Fnr family, at 3,464,475 to 3,465,116
_3307
HP15_3308: HP15_3308 - OsmC family protein, at 3,465,382 to 3,465,804
_3308
HP15_3309: HP15_3309 - S-adenosylmethionine decarboxylase proenzyme, at 3,466,052 to 3,466,846
_3309
Position (kb)
3465
3466 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3464.386 kb on - strand at 3464.414 kb on - strand at 3464.465 kb on - strand at 3464.551 kb on + strand, within HP15_3307 at 3464.582 kb on - strand, within HP15_3307 at 3464.666 kb on + strand, within HP15_3307 at 3464.733 kb on - strand, within HP15_3307 at 3464.789 kb on - strand, within HP15_3307 at 3464.809 kb on - strand, within HP15_3307 at 3464.817 kb on + strand, within HP15_3307 at 3464.836 kb on + strand, within HP15_3307 at 3464.844 kb on - strand, within HP15_3307 at 3464.844 kb on - strand, within HP15_3307 at 3464.844 kb on - strand, within HP15_3307 at 3464.844 kb on - strand, within HP15_3307 at 3464.931 kb on + strand, within HP15_3307 at 3464.980 kb on + strand, within HP15_3307 at 3464.982 kb on + strand, within HP15_3307 at 3465.270 kb on - strand at 3465.391 kb on + strand at 3465.399 kb on - strand at 3465.487 kb on - strand, within HP15_3308 at 3465.613 kb on - strand, within HP15_3308 at 3465.679 kb on + strand, within HP15_3308 at 3465.789 kb on + strand at 3465.798 kb on + strand at 3465.806 kb on - strand at 3465.806 kb on - strand at 3465.986 kb on + strand at 3466.011 kb on + strand at 3466.011 kb on + strand at 3466.011 kb on + strand at 3466.121 kb on - strand at 3466.137 kb on + strand, within HP15_3309 at 3466.187 kb on + strand, within HP15_3309 at 3466.200 kb on + strand, within HP15_3309 at 3466.241 kb on - strand, within HP15_3309 at 3466.256 kb on + strand, within HP15_3309 at 3466.318 kb on - strand, within HP15_3309 at 3466.411 kb on - strand, within HP15_3309 at 3466.473 kb on + strand, within HP15_3309 at 3466.473 kb on + strand, within HP15_3309 at 3466.481 kb on - strand, within HP15_3309 at 3466.599 kb on - strand, within HP15_3309 at 3466.670 kb on - strand, within HP15_3309 at 3466.701 kb on - strand, within HP15_3309
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. syringaldehyde 0.3125 mM remove 3,464,386 - +1.2 3,464,414 - +1.5 3,464,465 - +0.1 3,464,551 + HP15_3307 0.12 +0.7 3,464,582 - HP15_3307 0.17 +0.4 3,464,666 + HP15_3307 0.30 +0.5 3,464,733 - HP15_3307 0.40 +0.7 3,464,789 - HP15_3307 0.49 -0.5 3,464,809 - HP15_3307 0.52 +0.4 3,464,817 + HP15_3307 0.53 -0.3 3,464,836 + HP15_3307 0.56 +0.4 3,464,844 - HP15_3307 0.57 +0.0 3,464,844 - HP15_3307 0.57 +0.9 3,464,844 - HP15_3307 0.57 +0.3 3,464,844 - HP15_3307 0.57 -0.2 3,464,931 + HP15_3307 0.71 -0.1 3,464,980 + HP15_3307 0.79 +0.6 3,464,982 + HP15_3307 0.79 -0.7 3,465,270 - -0.3 3,465,391 + -0.0 3,465,399 - -1.3 3,465,487 - HP15_3308 0.25 +0.4 3,465,613 - HP15_3308 0.55 -0.6 3,465,679 + HP15_3308 0.70 -2.3 3,465,789 + -0.0 3,465,798 + +0.8 3,465,806 - -1.0 3,465,806 - -0.5 3,465,986 + +0.0 3,466,011 + -0.3 3,466,011 + -0.9 3,466,011 + -0.0 3,466,121 - +2.0 3,466,137 + HP15_3309 0.11 +0.9 3,466,187 + HP15_3309 0.17 -0.0 3,466,200 + HP15_3309 0.19 -0.3 3,466,241 - HP15_3309 0.24 +1.0 3,466,256 + HP15_3309 0.26 -0.2 3,466,318 - HP15_3309 0.33 -0.7 3,466,411 - HP15_3309 0.45 -1.4 3,466,473 + HP15_3309 0.53 +0.2 3,466,473 + HP15_3309 0.53 -0.4 3,466,481 - HP15_3309 0.54 +0.3 3,466,599 - HP15_3309 0.69 +0.6 3,466,670 - HP15_3309 0.78 -0.0 3,466,701 - HP15_3309 0.82 -0.4
Or see this region's nucleotide sequence