Experiment: m.b. syringaldehyde 0.3125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3301 and HP15_3302 are separated by 108 nucleotides HP15_3302 and HP15_3303 are separated by 70 nucleotides HP15_3303 and HP15_3304 overlap by 17 nucleotides
HP15_3301: HP15_3301 - glutathione S-transferase, at 3,459,077 to 3,459,823
_3301
HP15_3302: HP15_3302 - sterol desaturase family protein, at 3,459,932 to 3,460,918
_3302
HP15_3303: HP15_3303 - lysophospholipase, at 3,460,989 to 3,461,846
_3303
HP15_3304: HP15_3304 - molybdenum ABC transporter, periplasmic binding protein, at 3,461,830 to 3,462,633
_3304
Position (kb)
3459
3460
3461 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3458.974 kb on + strand at 3459.031 kb on - strand at 3459.083 kb on - strand at 3459.089 kb on - strand at 3459.233 kb on - strand, within HP15_3301 at 3459.260 kb on + strand, within HP15_3301 at 3459.268 kb on - strand, within HP15_3301 at 3459.268 kb on - strand, within HP15_3301 at 3459.268 kb on - strand, within HP15_3301 at 3459.268 kb on - strand, within HP15_3301 at 3459.273 kb on - strand, within HP15_3301 at 3459.347 kb on - strand, within HP15_3301 at 3459.492 kb on + strand, within HP15_3301 at 3459.500 kb on - strand, within HP15_3301 at 3459.581 kb on + strand, within HP15_3301 at 3459.602 kb on + strand, within HP15_3301 at 3459.656 kb on - strand, within HP15_3301 at 3459.673 kb on + strand, within HP15_3301 at 3459.715 kb on + strand, within HP15_3301 at 3459.723 kb on - strand, within HP15_3301 at 3459.775 kb on + strand at 3459.783 kb on - strand at 3459.816 kb on - strand at 3459.945 kb on + strand at 3460.065 kb on + strand, within HP15_3302 at 3460.120 kb on + strand, within HP15_3302 at 3460.174 kb on + strand, within HP15_3302 at 3460.182 kb on - strand, within HP15_3302 at 3460.202 kb on + strand, within HP15_3302 at 3460.202 kb on + strand, within HP15_3302 at 3460.211 kb on - strand, within HP15_3302 at 3460.211 kb on - strand, within HP15_3302 at 3460.277 kb on + strand, within HP15_3302 at 3460.308 kb on + strand, within HP15_3302 at 3460.314 kb on + strand, within HP15_3302 at 3460.314 kb on + strand, within HP15_3302 at 3460.388 kb on - strand, within HP15_3302 at 3460.429 kb on - strand, within HP15_3302 at 3460.456 kb on + strand, within HP15_3302 at 3460.481 kb on + strand, within HP15_3302 at 3460.481 kb on + strand, within HP15_3302 at 3460.482 kb on + strand, within HP15_3302 at 3460.484 kb on - strand, within HP15_3302 at 3460.712 kb on - strand, within HP15_3302 at 3460.716 kb on - strand, within HP15_3302 at 3460.733 kb on - strand, within HP15_3302 at 3460.749 kb on - strand, within HP15_3302 at 3460.905 kb on - strand at 3461.121 kb on - strand, within HP15_3303 at 3461.185 kb on + strand, within HP15_3303 at 3461.235 kb on + strand, within HP15_3303 at 3461.238 kb on - strand, within HP15_3303 at 3461.240 kb on + strand, within HP15_3303 at 3461.248 kb on - strand, within HP15_3303 at 3461.248 kb on - strand, within HP15_3303 at 3461.248 kb on - strand, within HP15_3303 at 3461.275 kb on + strand, within HP15_3303 at 3461.283 kb on - strand, within HP15_3303 at 3461.283 kb on - strand, within HP15_3303 at 3461.354 kb on + strand, within HP15_3303 at 3461.398 kb on + strand, within HP15_3303 at 3461.398 kb on + strand, within HP15_3303 at 3461.465 kb on + strand, within HP15_3303 at 3461.513 kb on - strand, within HP15_3303 at 3461.783 kb on + strand at 3461.783 kb on + strand at 3461.820 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. syringaldehyde 0.3125 mM remove 3,458,974 + +1.5 3,459,031 - +1.6 3,459,083 - -0.7 3,459,089 - -0.5 3,459,233 - HP15_3301 0.21 +0.7 3,459,260 + HP15_3301 0.24 +0.9 3,459,268 - HP15_3301 0.26 +1.0 3,459,268 - HP15_3301 0.26 -0.2 3,459,268 - HP15_3301 0.26 +0.8 3,459,268 - HP15_3301 0.26 -0.5 3,459,273 - HP15_3301 0.26 +1.4 3,459,347 - HP15_3301 0.36 +1.6 3,459,492 + HP15_3301 0.56 -0.4 3,459,500 - HP15_3301 0.57 +0.1 3,459,581 + HP15_3301 0.67 -0.6 3,459,602 + HP15_3301 0.70 -0.8 3,459,656 - HP15_3301 0.78 -0.1 3,459,673 + HP15_3301 0.80 -0.6 3,459,715 + HP15_3301 0.85 -0.2 3,459,723 - HP15_3301 0.86 -2.1 3,459,775 + -0.1 3,459,783 - +0.7 3,459,816 - +1.8 3,459,945 + -1.0 3,460,065 + HP15_3302 0.13 -0.4 3,460,120 + HP15_3302 0.19 -0.8 3,460,174 + HP15_3302 0.25 +0.7 3,460,182 - HP15_3302 0.25 -0.0 3,460,202 + HP15_3302 0.27 +1.4 3,460,202 + HP15_3302 0.27 -0.8 3,460,211 - HP15_3302 0.28 -1.6 3,460,211 - HP15_3302 0.28 +2.4 3,460,277 + HP15_3302 0.35 +0.5 3,460,308 + HP15_3302 0.38 -1.1 3,460,314 + HP15_3302 0.39 -0.7 3,460,314 + HP15_3302 0.39 +0.7 3,460,388 - HP15_3302 0.46 +0.6 3,460,429 - HP15_3302 0.50 -0.0 3,460,456 + HP15_3302 0.53 -1.0 3,460,481 + HP15_3302 0.56 -0.4 3,460,481 + HP15_3302 0.56 -1.7 3,460,482 + HP15_3302 0.56 -1.5 3,460,484 - HP15_3302 0.56 -0.6 3,460,712 - HP15_3302 0.79 -1.3 3,460,716 - HP15_3302 0.79 -1.1 3,460,733 - HP15_3302 0.81 +2.0 3,460,749 - HP15_3302 0.83 -0.3 3,460,905 - -0.9 3,461,121 - HP15_3303 0.15 -0.0 3,461,185 + HP15_3303 0.23 -0.7 3,461,235 + HP15_3303 0.29 -0.1 3,461,238 - HP15_3303 0.29 -0.0 3,461,240 + HP15_3303 0.29 -1.1 3,461,248 - HP15_3303 0.30 -0.0 3,461,248 - HP15_3303 0.30 -0.1 3,461,248 - HP15_3303 0.30 -0.2 3,461,275 + HP15_3303 0.33 +1.5 3,461,283 - HP15_3303 0.34 -0.5 3,461,283 - HP15_3303 0.34 +1.0 3,461,354 + HP15_3303 0.43 -0.3 3,461,398 + HP15_3303 0.48 +0.1 3,461,398 + HP15_3303 0.48 -0.4 3,461,465 + HP15_3303 0.55 +0.2 3,461,513 - HP15_3303 0.61 +1.0 3,461,783 + -0.1 3,461,783 + -0.5 3,461,820 + +0.3
Or see this region's nucleotide sequence