Strain Fitness in Marinobacter adhaerens HP15 around HP15_3302

Experiment: m.b. syringaldehyde 0.3125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3301 and HP15_3302 are separated by 108 nucleotidesHP15_3302 and HP15_3303 are separated by 70 nucleotidesHP15_3303 and HP15_3304 overlap by 17 nucleotides HP15_3301: HP15_3301 - glutathione S-transferase, at 3,459,077 to 3,459,823 _3301 HP15_3302: HP15_3302 - sterol desaturase family protein, at 3,459,932 to 3,460,918 _3302 HP15_3303: HP15_3303 - lysophospholipase, at 3,460,989 to 3,461,846 _3303 HP15_3304: HP15_3304 - molybdenum ABC transporter, periplasmic binding protein, at 3,461,830 to 3,462,633 _3304 Position (kb) 3459 3460 3461Strain fitness (log2 ratio) -2 -1 0 1 2at 3458.974 kb on + strandat 3459.031 kb on - strandat 3459.083 kb on - strandat 3459.089 kb on - strandat 3459.233 kb on - strand, within HP15_3301at 3459.260 kb on + strand, within HP15_3301at 3459.268 kb on - strand, within HP15_3301at 3459.268 kb on - strand, within HP15_3301at 3459.268 kb on - strand, within HP15_3301at 3459.268 kb on - strand, within HP15_3301at 3459.273 kb on - strand, within HP15_3301at 3459.347 kb on - strand, within HP15_3301at 3459.492 kb on + strand, within HP15_3301at 3459.500 kb on - strand, within HP15_3301at 3459.581 kb on + strand, within HP15_3301at 3459.602 kb on + strand, within HP15_3301at 3459.656 kb on - strand, within HP15_3301at 3459.673 kb on + strand, within HP15_3301at 3459.715 kb on + strand, within HP15_3301at 3459.723 kb on - strand, within HP15_3301at 3459.775 kb on + strandat 3459.783 kb on - strandat 3459.816 kb on - strandat 3459.945 kb on + strandat 3460.065 kb on + strand, within HP15_3302at 3460.120 kb on + strand, within HP15_3302at 3460.174 kb on + strand, within HP15_3302at 3460.182 kb on - strand, within HP15_3302at 3460.202 kb on + strand, within HP15_3302at 3460.202 kb on + strand, within HP15_3302at 3460.211 kb on - strand, within HP15_3302at 3460.211 kb on - strand, within HP15_3302at 3460.277 kb on + strand, within HP15_3302at 3460.308 kb on + strand, within HP15_3302at 3460.314 kb on + strand, within HP15_3302at 3460.314 kb on + strand, within HP15_3302at 3460.388 kb on - strand, within HP15_3302at 3460.429 kb on - strand, within HP15_3302at 3460.456 kb on + strand, within HP15_3302at 3460.481 kb on + strand, within HP15_3302at 3460.481 kb on + strand, within HP15_3302at 3460.482 kb on + strand, within HP15_3302at 3460.484 kb on - strand, within HP15_3302at 3460.712 kb on - strand, within HP15_3302at 3460.716 kb on - strand, within HP15_3302at 3460.733 kb on - strand, within HP15_3302at 3460.749 kb on - strand, within HP15_3302at 3460.905 kb on - strandat 3461.121 kb on - strand, within HP15_3303at 3461.185 kb on + strand, within HP15_3303at 3461.235 kb on + strand, within HP15_3303at 3461.238 kb on - strand, within HP15_3303at 3461.240 kb on + strand, within HP15_3303at 3461.248 kb on - strand, within HP15_3303at 3461.248 kb on - strand, within HP15_3303at 3461.248 kb on - strand, within HP15_3303at 3461.275 kb on + strand, within HP15_3303at 3461.283 kb on - strand, within HP15_3303at 3461.283 kb on - strand, within HP15_3303at 3461.354 kb on + strand, within HP15_3303at 3461.398 kb on + strand, within HP15_3303at 3461.398 kb on + strand, within HP15_3303at 3461.465 kb on + strand, within HP15_3303at 3461.513 kb on - strand, within HP15_3303at 3461.783 kb on + strandat 3461.783 kb on + strandat 3461.820 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. syringaldehyde 0.3125 mM
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3,458,974 + +1.5
3,459,031 - +1.6
3,459,083 - -0.7
3,459,089 - -0.5
3,459,233 - HP15_3301 0.21 +0.7
3,459,260 + HP15_3301 0.24 +0.9
3,459,268 - HP15_3301 0.26 +1.0
3,459,268 - HP15_3301 0.26 -0.2
3,459,268 - HP15_3301 0.26 +0.8
3,459,268 - HP15_3301 0.26 -0.5
3,459,273 - HP15_3301 0.26 +1.4
3,459,347 - HP15_3301 0.36 +1.6
3,459,492 + HP15_3301 0.56 -0.4
3,459,500 - HP15_3301 0.57 +0.1
3,459,581 + HP15_3301 0.67 -0.6
3,459,602 + HP15_3301 0.70 -0.8
3,459,656 - HP15_3301 0.78 -0.1
3,459,673 + HP15_3301 0.80 -0.6
3,459,715 + HP15_3301 0.85 -0.2
3,459,723 - HP15_3301 0.86 -2.1
3,459,775 + -0.1
3,459,783 - +0.7
3,459,816 - +1.8
3,459,945 + -1.0
3,460,065 + HP15_3302 0.13 -0.4
3,460,120 + HP15_3302 0.19 -0.8
3,460,174 + HP15_3302 0.25 +0.7
3,460,182 - HP15_3302 0.25 -0.0
3,460,202 + HP15_3302 0.27 +1.4
3,460,202 + HP15_3302 0.27 -0.8
3,460,211 - HP15_3302 0.28 -1.6
3,460,211 - HP15_3302 0.28 +2.4
3,460,277 + HP15_3302 0.35 +0.5
3,460,308 + HP15_3302 0.38 -1.1
3,460,314 + HP15_3302 0.39 -0.7
3,460,314 + HP15_3302 0.39 +0.7
3,460,388 - HP15_3302 0.46 +0.6
3,460,429 - HP15_3302 0.50 -0.0
3,460,456 + HP15_3302 0.53 -1.0
3,460,481 + HP15_3302 0.56 -0.4
3,460,481 + HP15_3302 0.56 -1.7
3,460,482 + HP15_3302 0.56 -1.5
3,460,484 - HP15_3302 0.56 -0.6
3,460,712 - HP15_3302 0.79 -1.3
3,460,716 - HP15_3302 0.79 -1.1
3,460,733 - HP15_3302 0.81 +2.0
3,460,749 - HP15_3302 0.83 -0.3
3,460,905 - -0.9
3,461,121 - HP15_3303 0.15 -0.0
3,461,185 + HP15_3303 0.23 -0.7
3,461,235 + HP15_3303 0.29 -0.1
3,461,238 - HP15_3303 0.29 -0.0
3,461,240 + HP15_3303 0.29 -1.1
3,461,248 - HP15_3303 0.30 -0.0
3,461,248 - HP15_3303 0.30 -0.1
3,461,248 - HP15_3303 0.30 -0.2
3,461,275 + HP15_3303 0.33 +1.5
3,461,283 - HP15_3303 0.34 -0.5
3,461,283 - HP15_3303 0.34 +1.0
3,461,354 + HP15_3303 0.43 -0.3
3,461,398 + HP15_3303 0.48 +0.1
3,461,398 + HP15_3303 0.48 -0.4
3,461,465 + HP15_3303 0.55 +0.2
3,461,513 - HP15_3303 0.61 +1.0
3,461,783 + -0.1
3,461,783 + -0.5
3,461,820 + +0.3

Or see this region's nucleotide sequence