Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03470

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c03450 and PGA1_c03460 are separated by 81 nucleotidesPGA1_c03460 and PGA1_c03470 are separated by 52 nucleotidesPGA1_c03470 and PGA1_c03480 are separated by 52 nucleotides PGA1_c03450: PGA1_c03450 - argininosuccinate lyase ArgH, at 331,010 to 332,380 _c03450 PGA1_c03460: PGA1_c03460 - hypothetical protein, at 332,462 to 332,647 _c03460 PGA1_c03470: PGA1_c03470 - diaminopimelate decarboxylase LysA, at 332,700 to 333,965 _c03470 PGA1_c03480: PGA1_c03480 - hypothetical protein, at 334,018 to 336,831 _c03480 Position (kb) 332 333 334Strain fitness (log2 ratio) -2 -1 0 1 2 3at 331.918 kb on + strand, within PGA1_c03450at 332.366 kb on - strandat 332.413 kb on - strandat 332.463 kb on - strandat 332.469 kb on + strandat 332.487 kb on - strand, within PGA1_c03460at 332.492 kb on - strand, within PGA1_c03460at 332.502 kb on + strand, within PGA1_c03460at 332.591 kb on - strand, within PGA1_c03460at 332.601 kb on + strand, within PGA1_c03460at 332.601 kb on + strand, within PGA1_c03460at 332.601 kb on + strand, within PGA1_c03460at 332.601 kb on + strand, within PGA1_c03460at 332.601 kb on + strand, within PGA1_c03460at 332.609 kb on - strand, within PGA1_c03460at 332.609 kb on - strand, within PGA1_c03460at 332.609 kb on - strand, within PGA1_c03460at 332.609 kb on - strand, within PGA1_c03460at 332.609 kb on - strand, within PGA1_c03460at 332.611 kb on + strand, within PGA1_c03460at 332.611 kb on + strand, within PGA1_c03460at 332.611 kb on + strand, within PGA1_c03460at 332.619 kb on - strand, within PGA1_c03460at 332.619 kb on - strand, within PGA1_c03460at 332.628 kb on + strand, within PGA1_c03460at 332.634 kb on + strandat 332.634 kb on + strandat 332.634 kb on + strandat 332.634 kb on + strandat 332.642 kb on + strandat 332.642 kb on + strandat 332.642 kb on + strandat 332.642 kb on + strandat 332.642 kb on - strandat 332.650 kb on - strandat 333.959 kb on + strandat 333.989 kb on + strandat 333.994 kb on + strandat 333.994 kb on + strandat 333.997 kb on - strandat 333.997 kb on - strandat 333.999 kb on + strandat 334.020 kb on + strandat 334.076 kb on + strandat 334.079 kb on + strandat 334.089 kb on + strandat 334.089 kb on + strandat 334.097 kb on - strandat 334.097 kb on - strandat 334.103 kb on - strandat 334.146 kb on - strandat 334.294 kb on + strandat 334.317 kb on + strand, within PGA1_c03480at 334.332 kb on + strand, within PGA1_c03480at 334.332 kb on + strand, within PGA1_c03480at 334.332 kb on + strand, within PGA1_c03480at 334.340 kb on - strand, within PGA1_c03480at 334.340 kb on - strand, within PGA1_c03480at 334.356 kb on + strand, within PGA1_c03480at 334.518 kb on + strand, within PGA1_c03480at 334.674 kb on + strand, within PGA1_c03480at 334.794 kb on + strand, within PGA1_c03480at 334.794 kb on + strand, within PGA1_c03480at 334.802 kb on - strand, within PGA1_c03480at 334.829 kb on + strand, within PGA1_c03480

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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331,918 + PGA1_c03450 0.66 -0.8
332,366 - +1.8
332,413 - -0.1
332,463 - -0.9
332,469 + +3.7
332,487 - PGA1_c03460 0.13 +0.5
332,492 - PGA1_c03460 0.16 -2.1
332,502 + PGA1_c03460 0.22 +0.7
332,591 - PGA1_c03460 0.69 +0.6
332,601 + PGA1_c03460 0.75 +2.1
332,601 + PGA1_c03460 0.75 -0.8
332,601 + PGA1_c03460 0.75 +0.7
332,601 + PGA1_c03460 0.75 -0.3
332,601 + PGA1_c03460 0.75 +1.3
332,609 - PGA1_c03460 0.79 +0.2
332,609 - PGA1_c03460 0.79 -2.1
332,609 - PGA1_c03460 0.79 +0.2
332,609 - PGA1_c03460 0.79 +0.5
332,609 - PGA1_c03460 0.79 +1.1
332,611 + PGA1_c03460 0.80 +0.1
332,611 + PGA1_c03460 0.80 -0.1
332,611 + PGA1_c03460 0.80 +0.1
332,619 - PGA1_c03460 0.84 +2.1
332,619 - PGA1_c03460 0.84 -2.6
332,628 + PGA1_c03460 0.89 -1.6
332,634 + -1.2
332,634 + +2.0
332,634 + +1.4
332,634 + -0.3
332,642 + -0.2
332,642 + +0.1
332,642 + +2.9
332,642 + +1.6
332,642 - -2.2
332,650 - +0.4
333,959 + +0.9
333,989 + -1.2
333,994 + -1.8
333,994 + +0.1
333,997 - -0.5
333,997 - +0.8
333,999 + +0.2
334,020 + +1.8
334,076 + -1.8
334,079 + -1.6
334,089 + +2.6
334,089 + +0.9
334,097 - +1.7
334,097 - -1.2
334,103 - +0.4
334,146 - +0.6
334,294 + +0.2
334,317 + PGA1_c03480 0.11 -2.5
334,332 + PGA1_c03480 0.11 +1.0
334,332 + PGA1_c03480 0.11 -2.2
334,332 + PGA1_c03480 0.11 -0.8
334,340 - PGA1_c03480 0.11 +0.9
334,340 - PGA1_c03480 0.11 -1.2
334,356 + PGA1_c03480 0.12 -1.9
334,518 + PGA1_c03480 0.18 +1.1
334,674 + PGA1_c03480 0.23 +0.4
334,794 + PGA1_c03480 0.28 +1.9
334,794 + PGA1_c03480 0.28 -1.0
334,802 - PGA1_c03480 0.28 +2.1
334,829 + PGA1_c03480 0.29 -1.6

Or see this region's nucleotide sequence