Strain Fitness in Marinobacter adhaerens HP15 around HP15_2927

Experiment: m.b. syringaldehyde 0.3125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2925 and HP15_2926 are separated by 29 nucleotidesHP15_2926 and HP15_2927 are separated by 119 nucleotidesHP15_2927 and HP15_2928 are separated by 110 nucleotides HP15_2925: HP15_2925 - adenosylmethionine-8-amino-7-oxononanoate transaminase, at 3,063,695 to 3,065,047 _2925 HP15_2926: HP15_2926 - ribosomal RNA small subunit methyltransferase E, at 3,065,077 to 3,065,811 _2926 HP15_2927: HP15_2927 - conserved hypothetical protein, membrane, at 3,065,931 to 3,067,160 _2927 HP15_2928: HP15_2928 - signal transduction protein, at 3,067,271 to 3,068,320 _2928 Position (kb) 3065 3066 3067 3068Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3064.950 kb on - strandat 3065.021 kb on + strandat 3065.022 kb on + strandat 3065.029 kb on - strandat 3065.029 kb on - strandat 3065.088 kb on - strandat 3065.094 kb on - strandat 3065.118 kb on + strandat 3065.118 kb on + strandat 3065.137 kb on + strandat 3065.193 kb on - strand, within HP15_2926at 3065.279 kb on - strand, within HP15_2926at 3065.330 kb on - strand, within HP15_2926at 3065.337 kb on - strand, within HP15_2926at 3065.352 kb on + strand, within HP15_2926at 3065.396 kb on - strand, within HP15_2926at 3065.430 kb on + strand, within HP15_2926at 3065.497 kb on - strand, within HP15_2926at 3065.560 kb on - strand, within HP15_2926at 3065.877 kb on + strandat 3065.886 kb on - strandat 3066.035 kb on + strandat 3066.146 kb on + strand, within HP15_2927at 3066.154 kb on - strand, within HP15_2927at 3066.199 kb on + strand, within HP15_2927at 3066.472 kb on - strand, within HP15_2927at 3066.506 kb on - strand, within HP15_2927at 3066.523 kb on + strand, within HP15_2927at 3066.583 kb on + strand, within HP15_2927at 3066.779 kb on + strand, within HP15_2927at 3066.779 kb on + strand, within HP15_2927at 3066.779 kb on + strand, within HP15_2927at 3066.787 kb on - strand, within HP15_2927at 3066.787 kb on - strand, within HP15_2927at 3066.787 kb on - strand, within HP15_2927at 3066.826 kb on - strand, within HP15_2927at 3066.851 kb on + strand, within HP15_2927at 3066.882 kb on + strand, within HP15_2927at 3066.945 kb on + strand, within HP15_2927at 3066.953 kb on - strand, within HP15_2927at 3066.977 kb on + strand, within HP15_2927at 3066.977 kb on + strand, within HP15_2927at 3067.018 kb on - strand, within HP15_2927at 3067.020 kb on - strand, within HP15_2927at 3067.131 kb on + strandat 3067.210 kb on + strandat 3067.210 kb on + strandat 3067.356 kb on - strandat 3067.395 kb on + strand, within HP15_2928at 3067.468 kb on - strand, within HP15_2928at 3067.503 kb on + strand, within HP15_2928at 3067.583 kb on + strand, within HP15_2928at 3067.675 kb on - strand, within HP15_2928at 3067.737 kb on + strand, within HP15_2928at 3067.814 kb on - strand, within HP15_2928at 3067.841 kb on + strand, within HP15_2928at 3067.841 kb on + strand, within HP15_2928at 3067.841 kb on + strand, within HP15_2928at 3067.841 kb on + strand, within HP15_2928at 3067.849 kb on - strand, within HP15_2928at 3067.906 kb on + strand, within HP15_2928at 3068.051 kb on - strand, within HP15_2928

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. syringaldehyde 0.3125 mM
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3,064,950 - -1.1
3,065,021 + +1.3
3,065,022 + +0.5
3,065,029 - -0.5
3,065,029 - +0.2
3,065,088 - +0.3
3,065,094 - +0.7
3,065,118 + +0.5
3,065,118 + -0.1
3,065,137 + -1.4
3,065,193 - HP15_2926 0.16 +0.6
3,065,279 - HP15_2926 0.27 +1.2
3,065,330 - HP15_2926 0.34 +0.6
3,065,337 - HP15_2926 0.35 +1.2
3,065,352 + HP15_2926 0.37 -0.8
3,065,396 - HP15_2926 0.43 -0.3
3,065,430 + HP15_2926 0.48 +0.3
3,065,497 - HP15_2926 0.57 +0.1
3,065,560 - HP15_2926 0.66 +0.9
3,065,877 + -1.5
3,065,886 - +1.9
3,066,035 + +4.0
3,066,146 + HP15_2927 0.17 +0.7
3,066,154 - HP15_2927 0.18 +0.4
3,066,199 + HP15_2927 0.22 -0.6
3,066,472 - HP15_2927 0.44 +1.3
3,066,506 - HP15_2927 0.47 +0.5
3,066,523 + HP15_2927 0.48 +0.7
3,066,583 + HP15_2927 0.53 -0.2
3,066,779 + HP15_2927 0.69 +0.3
3,066,779 + HP15_2927 0.69 +0.9
3,066,779 + HP15_2927 0.69 +0.2
3,066,787 - HP15_2927 0.70 +0.6
3,066,787 - HP15_2927 0.70 +1.5
3,066,787 - HP15_2927 0.70 -0.1
3,066,826 - HP15_2927 0.73 -0.3
3,066,851 + HP15_2927 0.75 +1.5
3,066,882 + HP15_2927 0.77 -0.1
3,066,945 + HP15_2927 0.82 -1.1
3,066,953 - HP15_2927 0.83 +2.5
3,066,977 + HP15_2927 0.85 +1.3
3,066,977 + HP15_2927 0.85 -0.1
3,067,018 - HP15_2927 0.88 +0.6
3,067,020 - HP15_2927 0.89 -0.3
3,067,131 + +0.3
3,067,210 + +0.3
3,067,210 + +0.8
3,067,356 - +0.0
3,067,395 + HP15_2928 0.12 +0.9
3,067,468 - HP15_2928 0.19 +0.7
3,067,503 + HP15_2928 0.22 +0.2
3,067,583 + HP15_2928 0.30 -2.4
3,067,675 - HP15_2928 0.38 +0.0
3,067,737 + HP15_2928 0.44 +0.7
3,067,814 - HP15_2928 0.52 +1.7
3,067,841 + HP15_2928 0.54 -0.5
3,067,841 + HP15_2928 0.54 +0.4
3,067,841 + HP15_2928 0.54 -0.1
3,067,841 + HP15_2928 0.54 -0.2
3,067,849 - HP15_2928 0.55 +0.3
3,067,906 + HP15_2928 0.60 +1.0
3,068,051 - HP15_2928 0.74 -0.2

Or see this region's nucleotide sequence