Experiment: Glycerol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c26880 and PGA1_c26890 are separated by 66 nucleotides PGA1_c26890 and PGA1_c26900 are separated by 328 nucleotides
PGA1_c26880: PGA1_c26880 - putative iron transport system permease protein, at 2,804,947 to 2,806,026
_c26880
PGA1_c26890: PGA1_c26890 - putative endoribonuclease, at 2,806,093 to 2,806,440
_c26890
PGA1_c26900: PGA1_c26900 - putative lipoprotein, at 2,806,769 to 2,807,800
_c26900
Position (kb)
2806
2807 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2805.348 kb on + strand, within PGA1_c26880 at 2806.172 kb on + strand, within PGA1_c26890 at 2806.178 kb on + strand, within PGA1_c26890 at 2806.196 kb on + strand, within PGA1_c26890 at 2806.204 kb on - strand, within PGA1_c26890 at 2806.257 kb on - strand, within PGA1_c26890 at 2806.264 kb on + strand, within PGA1_c26890 at 2806.285 kb on + strand, within PGA1_c26890 at 2806.337 kb on - strand, within PGA1_c26890 at 2806.337 kb on - strand, within PGA1_c26890 at 2806.442 kb on - strand at 2806.477 kb on + strand at 2806.480 kb on - strand at 2806.625 kb on + strand at 2806.633 kb on - strand at 2806.640 kb on - strand at 2806.679 kb on + strand at 2806.705 kb on - strand at 2806.755 kb on - strand at 2806.850 kb on - strand at 2806.850 kb on - strand at 2806.868 kb on + strand at 2806.881 kb on + strand, within PGA1_c26900 at 2806.881 kb on + strand, within PGA1_c26900 at 2806.889 kb on - strand, within PGA1_c26900 at 2806.938 kb on - strand, within PGA1_c26900 at 2806.987 kb on + strand, within PGA1_c26900 at 2806.987 kb on + strand, within PGA1_c26900 at 2806.989 kb on + strand, within PGA1_c26900 at 2807.019 kb on + strand, within PGA1_c26900 at 2807.025 kb on + strand, within PGA1_c26900 at 2807.129 kb on + strand, within PGA1_c26900 at 2807.166 kb on + strand, within PGA1_c26900 at 2807.176 kb on + strand, within PGA1_c26900 at 2807.181 kb on + strand, within PGA1_c26900 at 2807.181 kb on + strand, within PGA1_c26900 at 2807.189 kb on - strand, within PGA1_c26900 at 2807.222 kb on - strand, within PGA1_c26900 at 2807.222 kb on - strand, within PGA1_c26900 at 2807.325 kb on - strand, within PGA1_c26900 at 2807.382 kb on + strand, within PGA1_c26900 at 2807.390 kb on - strand, within PGA1_c26900 at 2807.431 kb on - strand, within PGA1_c26900 at 2807.438 kb on + strand, within PGA1_c26900 at 2807.438 kb on + strand, within PGA1_c26900
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol (C) remove 2,805,348 + PGA1_c26880 0.37 +3.6 2,806,172 + PGA1_c26890 0.23 +1.5 2,806,178 + PGA1_c26890 0.24 +2.1 2,806,196 + PGA1_c26890 0.30 +2.4 2,806,204 - PGA1_c26890 0.32 +0.7 2,806,257 - PGA1_c26890 0.47 +1.0 2,806,264 + PGA1_c26890 0.49 -0.1 2,806,285 + PGA1_c26890 0.55 +1.1 2,806,337 - PGA1_c26890 0.70 +1.7 2,806,337 - PGA1_c26890 0.70 -0.7 2,806,442 - -1.7 2,806,477 + -1.6 2,806,480 - +0.4 2,806,625 + -1.4 2,806,633 - -1.0 2,806,640 - +1.8 2,806,679 + +0.6 2,806,705 - +1.1 2,806,755 - -0.0 2,806,850 - +0.6 2,806,850 - -2.1 2,806,868 + -1.4 2,806,881 + PGA1_c26900 0.11 -1.7 2,806,881 + PGA1_c26900 0.11 -1.7 2,806,889 - PGA1_c26900 0.12 +1.1 2,806,938 - PGA1_c26900 0.16 +0.9 2,806,987 + PGA1_c26900 0.21 +1.8 2,806,987 + PGA1_c26900 0.21 +0.4 2,806,989 + PGA1_c26900 0.21 +1.4 2,807,019 + PGA1_c26900 0.24 -0.3 2,807,025 + PGA1_c26900 0.25 -1.6 2,807,129 + PGA1_c26900 0.35 +1.4 2,807,166 + PGA1_c26900 0.38 -0.0 2,807,176 + PGA1_c26900 0.39 -0.8 2,807,181 + PGA1_c26900 0.40 +1.0 2,807,181 + PGA1_c26900 0.40 +0.9 2,807,189 - PGA1_c26900 0.41 +1.6 2,807,222 - PGA1_c26900 0.44 -1.9 2,807,222 - PGA1_c26900 0.44 +0.9 2,807,325 - PGA1_c26900 0.54 -0.3 2,807,382 + PGA1_c26900 0.59 -0.1 2,807,390 - PGA1_c26900 0.60 +2.0 2,807,431 - PGA1_c26900 0.64 -2.1 2,807,438 + PGA1_c26900 0.65 -1.6 2,807,438 + PGA1_c26900 0.65 -1.6
Or see this region's nucleotide sequence