Strain Fitness in Marinobacter adhaerens HP15 around HP15_2550

Experiment: m.b. syringaldehyde 0.3125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2548 and HP15_2549 are separated by 30 nucleotidesHP15_2549 and HP15_2550 are separated by 23 nucleotidesHP15_2550 and HP15_2551 are separated by 1 nucleotides HP15_2548: HP15_2548 - xanthine/uracil permease family protein, at 2,694,502 to 2,695,800 _2548 HP15_2549: HP15_2549 - adenine phosphoribosyltransferase, at 2,695,831 to 2,696,373 _2549 HP15_2550: HP15_2550 - fumarylacetoacetate hydrolase family protein, at 2,696,397 to 2,697,059 _2550 HP15_2551: HP15_2551 - ABC-1 domain protein, at 2,697,061 to 2,698,416 _2551 Position (kb) 2696 2697 2698Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2695.514 kb on + strand, within HP15_2548at 2695.585 kb on - strand, within HP15_2548at 2695.699 kb on + strandat 2695.724 kb on + strandat 2695.873 kb on + strandat 2695.873 kb on + strandat 2695.873 kb on + strandat 2695.873 kb on + strandat 2695.873 kb on + strandat 2695.873 kb on + strandat 2695.881 kb on - strandat 2695.881 kb on - strandat 2695.881 kb on - strandat 2695.883 kb on + strandat 2695.891 kb on - strand, within HP15_2549at 2695.929 kb on + strand, within HP15_2549at 2696.038 kb on + strand, within HP15_2549at 2696.046 kb on - strand, within HP15_2549at 2696.046 kb on - strand, within HP15_2549at 2696.046 kb on - strand, within HP15_2549at 2696.053 kb on - strand, within HP15_2549at 2696.076 kb on - strand, within HP15_2549at 2696.152 kb on - strand, within HP15_2549at 2696.348 kb on - strandat 2696.348 kb on - strandat 2696.499 kb on - strand, within HP15_2550at 2696.499 kb on - strand, within HP15_2550at 2696.640 kb on + strand, within HP15_2550at 2696.684 kb on + strand, within HP15_2550at 2696.769 kb on - strand, within HP15_2550at 2697.128 kb on + strandat 2697.129 kb on + strandat 2697.278 kb on + strand, within HP15_2551at 2697.537 kb on - strand, within HP15_2551at 2697.755 kb on - strand, within HP15_2551at 2697.828 kb on + strand, within HP15_2551at 2697.852 kb on + strand, within HP15_2551at 2697.852 kb on + strand, within HP15_2551at 2697.927 kb on + strand, within HP15_2551

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. syringaldehyde 0.3125 mM
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2,695,514 + HP15_2548 0.78 -0.3
2,695,585 - HP15_2548 0.83 +0.9
2,695,699 + -0.9
2,695,724 + +1.4
2,695,873 + -0.9
2,695,873 + -0.2
2,695,873 + -0.5
2,695,873 + -0.4
2,695,873 + +0.6
2,695,873 + -0.2
2,695,881 - +0.1
2,695,881 - +0.4
2,695,881 - +0.7
2,695,883 + -0.3
2,695,891 - HP15_2549 0.11 -0.5
2,695,929 + HP15_2549 0.18 -0.1
2,696,038 + HP15_2549 0.38 +0.0
2,696,046 - HP15_2549 0.40 -0.4
2,696,046 - HP15_2549 0.40 -0.1
2,696,046 - HP15_2549 0.40 +0.4
2,696,053 - HP15_2549 0.41 +2.0
2,696,076 - HP15_2549 0.45 +0.0
2,696,152 - HP15_2549 0.59 +0.0
2,696,348 - -2.9
2,696,348 - -1.7
2,696,499 - HP15_2550 0.15 +2.2
2,696,499 - HP15_2550 0.15 +0.3
2,696,640 + HP15_2550 0.37 +0.7
2,696,684 + HP15_2550 0.43 -0.7
2,696,769 - HP15_2550 0.56 +0.4
2,697,128 + +1.0
2,697,129 + -0.5
2,697,278 + HP15_2551 0.16 +0.4
2,697,537 - HP15_2551 0.35 -1.1
2,697,755 - HP15_2551 0.51 -0.4
2,697,828 + HP15_2551 0.57 +0.0
2,697,852 + HP15_2551 0.58 +0.5
2,697,852 + HP15_2551 0.58 +0.7
2,697,927 + HP15_2551 0.64 -0.0

Or see this region's nucleotide sequence