Strain Fitness in Marinobacter adhaerens HP15 around HP15_2289

Experiment: m.b. syringaldehyde 0.3125 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2287 and HP15_2288 overlap by 4 nucleotidesHP15_2288 and HP15_2289 overlap by 15 nucleotidesHP15_2289 and HP15_2290 overlap by 4 nucleotides HP15_2287: HP15_2287 - conserved hypothetical protein, at 2,408,749 to 2,410,131 _2287 HP15_2288: HP15_2288 - flagellar protein FhlB cytoplasmic domain protein, at 2,410,128 to 2,410,442 _2288 HP15_2289: HP15_2289 - ATPase associated with various cellular activities AAA_5, at 2,410,428 to 2,411,531 _2289 HP15_2290: HP15_2290 - type IV-A pilus assembly ATPase PilB, at 2,411,528 to 2,413,810 _2290 Position (kb) 2410 2411 2412Strain fitness (log2 ratio) -2 -1 0 1 2at 2409.509 kb on + strand, within HP15_2287at 2409.804 kb on + strand, within HP15_2287at 2409.822 kb on - strand, within HP15_2287at 2409.913 kb on + strand, within HP15_2287at 2409.913 kb on - strand, within HP15_2287at 2409.953 kb on + strand, within HP15_2287at 2409.953 kb on + strand, within HP15_2287at 2409.961 kb on - strand, within HP15_2287at 2410.042 kb on + strandat 2410.078 kb on + strandat 2410.078 kb on + strandat 2410.078 kb on + strandat 2410.078 kb on + strandat 2410.078 kb on + strandat 2410.086 kb on - strandat 2410.086 kb on - strandat 2410.086 kb on - strandat 2410.086 kb on - strandat 2410.086 kb on - strandat 2410.113 kb on + strandat 2410.146 kb on + strandat 2410.148 kb on + strandat 2410.156 kb on - strandat 2410.159 kb on - strandat 2410.393 kb on + strand, within HP15_2288at 2410.393 kb on + strand, within HP15_2288at 2410.450 kb on + strandat 2410.458 kb on - strandat 2410.509 kb on - strandat 2410.681 kb on + strand, within HP15_2289at 2410.689 kb on - strand, within HP15_2289at 2410.705 kb on + strand, within HP15_2289at 2410.774 kb on - strand, within HP15_2289at 2410.779 kb on - strand, within HP15_2289at 2410.887 kb on + strand, within HP15_2289at 2410.887 kb on + strand, within HP15_2289at 2411.008 kb on + strand, within HP15_2289at 2411.022 kb on + strand, within HP15_2289at 2411.062 kb on - strand, within HP15_2289at 2411.136 kb on + strand, within HP15_2289at 2411.136 kb on + strand, within HP15_2289at 2411.168 kb on - strand, within HP15_2289at 2411.188 kb on + strand, within HP15_2289at 2411.207 kb on + strand, within HP15_2289at 2411.215 kb on - strand, within HP15_2289at 2411.215 kb on - strand, within HP15_2289at 2411.215 kb on - strand, within HP15_2289at 2411.215 kb on - strand, within HP15_2289at 2411.314 kb on - strand, within HP15_2289at 2411.441 kb on - strandat 2411.498 kb on + strandat 2411.630 kb on + strandat 2411.630 kb on + strandat 2411.638 kb on - strandat 2411.638 kb on - strandat 2411.971 kb on + strand, within HP15_2290at 2412.020 kb on + strand, within HP15_2290at 2412.127 kb on - strand, within HP15_2290at 2412.178 kb on + strand, within HP15_2290at 2412.251 kb on + strand, within HP15_2290at 2412.259 kb on + strand, within HP15_2290at 2412.283 kb on + strand, within HP15_2290at 2412.459 kb on - strand, within HP15_2290at 2412.461 kb on - strand, within HP15_2290at 2412.507 kb on + strand, within HP15_2290at 2412.515 kb on - strand, within HP15_2290

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. syringaldehyde 0.3125 mM
remove
2,409,509 + HP15_2287 0.55 -0.0
2,409,804 + HP15_2287 0.76 -1.0
2,409,822 - HP15_2287 0.78 +0.4
2,409,913 + HP15_2287 0.84 -0.0
2,409,913 - HP15_2287 0.84 +0.1
2,409,953 + HP15_2287 0.87 -1.3
2,409,953 + HP15_2287 0.87 -0.8
2,409,961 - HP15_2287 0.88 -1.2
2,410,042 + +0.4
2,410,078 + +0.8
2,410,078 + +0.4
2,410,078 + +1.8
2,410,078 + -0.8
2,410,078 + -0.4
2,410,086 - -0.8
2,410,086 - +0.1
2,410,086 - -0.8
2,410,086 - +1.4
2,410,086 - -0.5
2,410,113 + +0.3
2,410,146 + +0.4
2,410,148 + +2.6
2,410,156 - -1.0
2,410,159 - +0.1
2,410,393 + HP15_2288 0.84 +1.1
2,410,393 + HP15_2288 0.84 +0.3
2,410,450 + -0.3
2,410,458 - -1.9
2,410,509 - +1.4
2,410,681 + HP15_2289 0.23 -0.0
2,410,689 - HP15_2289 0.24 +0.2
2,410,705 + HP15_2289 0.25 -1.0
2,410,774 - HP15_2289 0.31 -1.0
2,410,779 - HP15_2289 0.32 -0.8
2,410,887 + HP15_2289 0.42 -1.0
2,410,887 + HP15_2289 0.42 +0.2
2,411,008 + HP15_2289 0.53 -0.4
2,411,022 + HP15_2289 0.54 -1.6
2,411,062 - HP15_2289 0.57 +0.0
2,411,136 + HP15_2289 0.64 +0.2
2,411,136 + HP15_2289 0.64 -0.0
2,411,168 - HP15_2289 0.67 +0.4
2,411,188 + HP15_2289 0.69 +0.0
2,411,207 + HP15_2289 0.71 -0.5
2,411,215 - HP15_2289 0.71 +1.8
2,411,215 - HP15_2289 0.71 +1.8
2,411,215 - HP15_2289 0.71 -0.2
2,411,215 - HP15_2289 0.71 -0.8
2,411,314 - HP15_2289 0.80 -0.9
2,411,441 - +0.2
2,411,498 + -0.5
2,411,630 + +0.3
2,411,630 + +1.0
2,411,638 - +0.1
2,411,638 - +0.4
2,411,971 + HP15_2290 0.19 -0.6
2,412,020 + HP15_2290 0.22 +0.2
2,412,127 - HP15_2290 0.26 +0.2
2,412,178 + HP15_2290 0.28 +0.6
2,412,251 + HP15_2290 0.32 -0.5
2,412,259 + HP15_2290 0.32 +0.6
2,412,283 + HP15_2290 0.33 +0.2
2,412,459 - HP15_2290 0.41 -0.6
2,412,461 - HP15_2290 0.41 +0.8
2,412,507 + HP15_2290 0.43 +0.2
2,412,515 - HP15_2290 0.43 -0.2

Or see this region's nucleotide sequence