Experiment: m.b. syringaldehyde 0.3125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2287 and HP15_2288 overlap by 4 nucleotides HP15_2288 and HP15_2289 overlap by 15 nucleotides HP15_2289 and HP15_2290 overlap by 4 nucleotides
HP15_2287: HP15_2287 - conserved hypothetical protein, at 2,408,749 to 2,410,131
_2287
HP15_2288: HP15_2288 - flagellar protein FhlB cytoplasmic domain protein, at 2,410,128 to 2,410,442
_2288
HP15_2289: HP15_2289 - ATPase associated with various cellular activities AAA_5, at 2,410,428 to 2,411,531
_2289
HP15_2290: HP15_2290 - type IV-A pilus assembly ATPase PilB, at 2,411,528 to 2,413,810
_2290
Position (kb)
2410
2411
2412 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2409.509 kb on + strand, within HP15_2287 at 2409.804 kb on + strand, within HP15_2287 at 2409.822 kb on - strand, within HP15_2287 at 2409.913 kb on + strand, within HP15_2287 at 2409.913 kb on - strand, within HP15_2287 at 2409.953 kb on + strand, within HP15_2287 at 2409.953 kb on + strand, within HP15_2287 at 2409.961 kb on - strand, within HP15_2287 at 2410.042 kb on + strand at 2410.078 kb on + strand at 2410.078 kb on + strand at 2410.078 kb on + strand at 2410.078 kb on + strand at 2410.078 kb on + strand at 2410.086 kb on - strand at 2410.086 kb on - strand at 2410.086 kb on - strand at 2410.086 kb on - strand at 2410.086 kb on - strand at 2410.113 kb on + strand at 2410.146 kb on + strand at 2410.148 kb on + strand at 2410.156 kb on - strand at 2410.159 kb on - strand at 2410.393 kb on + strand, within HP15_2288 at 2410.393 kb on + strand, within HP15_2288 at 2410.450 kb on + strand at 2410.458 kb on - strand at 2410.509 kb on - strand at 2410.681 kb on + strand, within HP15_2289 at 2410.689 kb on - strand, within HP15_2289 at 2410.705 kb on + strand, within HP15_2289 at 2410.774 kb on - strand, within HP15_2289 at 2410.779 kb on - strand, within HP15_2289 at 2410.887 kb on + strand, within HP15_2289 at 2410.887 kb on + strand, within HP15_2289 at 2411.008 kb on + strand, within HP15_2289 at 2411.022 kb on + strand, within HP15_2289 at 2411.062 kb on - strand, within HP15_2289 at 2411.136 kb on + strand, within HP15_2289 at 2411.136 kb on + strand, within HP15_2289 at 2411.168 kb on - strand, within HP15_2289 at 2411.188 kb on + strand, within HP15_2289 at 2411.207 kb on + strand, within HP15_2289 at 2411.215 kb on - strand, within HP15_2289 at 2411.215 kb on - strand, within HP15_2289 at 2411.215 kb on - strand, within HP15_2289 at 2411.215 kb on - strand, within HP15_2289 at 2411.314 kb on - strand, within HP15_2289 at 2411.441 kb on - strand at 2411.498 kb on + strand at 2411.630 kb on + strand at 2411.630 kb on + strand at 2411.638 kb on - strand at 2411.638 kb on - strand at 2411.971 kb on + strand, within HP15_2290 at 2412.020 kb on + strand, within HP15_2290 at 2412.127 kb on - strand, within HP15_2290 at 2412.178 kb on + strand, within HP15_2290 at 2412.251 kb on + strand, within HP15_2290 at 2412.259 kb on + strand, within HP15_2290 at 2412.283 kb on + strand, within HP15_2290 at 2412.459 kb on - strand, within HP15_2290 at 2412.461 kb on - strand, within HP15_2290 at 2412.507 kb on + strand, within HP15_2290 at 2412.515 kb on - strand, within HP15_2290
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. syringaldehyde 0.3125 mM remove 2,409,509 + HP15_2287 0.55 -0.0 2,409,804 + HP15_2287 0.76 -1.0 2,409,822 - HP15_2287 0.78 +0.4 2,409,913 + HP15_2287 0.84 -0.0 2,409,913 - HP15_2287 0.84 +0.1 2,409,953 + HP15_2287 0.87 -1.3 2,409,953 + HP15_2287 0.87 -0.8 2,409,961 - HP15_2287 0.88 -1.2 2,410,042 + +0.4 2,410,078 + +0.8 2,410,078 + +0.4 2,410,078 + +1.8 2,410,078 + -0.8 2,410,078 + -0.4 2,410,086 - -0.8 2,410,086 - +0.1 2,410,086 - -0.8 2,410,086 - +1.4 2,410,086 - -0.5 2,410,113 + +0.3 2,410,146 + +0.4 2,410,148 + +2.6 2,410,156 - -1.0 2,410,159 - +0.1 2,410,393 + HP15_2288 0.84 +1.1 2,410,393 + HP15_2288 0.84 +0.3 2,410,450 + -0.3 2,410,458 - -1.9 2,410,509 - +1.4 2,410,681 + HP15_2289 0.23 -0.0 2,410,689 - HP15_2289 0.24 +0.2 2,410,705 + HP15_2289 0.25 -1.0 2,410,774 - HP15_2289 0.31 -1.0 2,410,779 - HP15_2289 0.32 -0.8 2,410,887 + HP15_2289 0.42 -1.0 2,410,887 + HP15_2289 0.42 +0.2 2,411,008 + HP15_2289 0.53 -0.4 2,411,022 + HP15_2289 0.54 -1.6 2,411,062 - HP15_2289 0.57 +0.0 2,411,136 + HP15_2289 0.64 +0.2 2,411,136 + HP15_2289 0.64 -0.0 2,411,168 - HP15_2289 0.67 +0.4 2,411,188 + HP15_2289 0.69 +0.0 2,411,207 + HP15_2289 0.71 -0.5 2,411,215 - HP15_2289 0.71 +1.8 2,411,215 - HP15_2289 0.71 +1.8 2,411,215 - HP15_2289 0.71 -0.2 2,411,215 - HP15_2289 0.71 -0.8 2,411,314 - HP15_2289 0.80 -0.9 2,411,441 - +0.2 2,411,498 + -0.5 2,411,630 + +0.3 2,411,630 + +1.0 2,411,638 - +0.1 2,411,638 - +0.4 2,411,971 + HP15_2290 0.19 -0.6 2,412,020 + HP15_2290 0.22 +0.2 2,412,127 - HP15_2290 0.26 +0.2 2,412,178 + HP15_2290 0.28 +0.6 2,412,251 + HP15_2290 0.32 -0.5 2,412,259 + HP15_2290 0.32 +0.6 2,412,283 + HP15_2290 0.33 +0.2 2,412,459 - HP15_2290 0.41 -0.6 2,412,461 - HP15_2290 0.41 +0.8 2,412,507 + HP15_2290 0.43 +0.2 2,412,515 - HP15_2290 0.43 -0.2
Or see this region's nucleotide sequence