Experiment: m.b. syringaldehyde 0.3125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2095 and HP15_2096 are separated by 11 nucleotides HP15_2096 and HP15_2097 are separated by 95 nucleotides HP15_2097 and HP15_2098 are separated by 49 nucleotides
HP15_2095: HP15_2095 - aspartate aminotransferase, at 2,194,367 to 2,195,581
_2095
HP15_2096: HP15_2096 - conserved hypothetical protein, at 2,195,593 to 2,196,063
_2096
HP15_2097: HP15_2097 - protease HtpX-like protein, at 2,196,159 to 2,197,040
_2097
HP15_2098: HP15_2098 - erythronate-4-phosphate dehydrogenase, at 2,197,090 to 2,198,241
_2098
Position (kb)
2196
2197
2198 Strain fitness (log2 ratio)
-1
0
1
2 at 2195.392 kb on + strand, within HP15_2095 at 2195.728 kb on - strand, within HP15_2096 at 2195.728 kb on - strand, within HP15_2096 at 2195.821 kb on + strand, within HP15_2096 at 2195.829 kb on - strand, within HP15_2096 at 2195.829 kb on - strand, within HP15_2096 at 2195.934 kb on + strand, within HP15_2096 at 2195.955 kb on + strand, within HP15_2096 at 2196.109 kb on + strand at 2196.211 kb on + strand at 2196.264 kb on - strand, within HP15_2097 at 2196.643 kb on - strand, within HP15_2097 at 2196.768 kb on + strand, within HP15_2097 at 2196.776 kb on - strand, within HP15_2097 at 2196.872 kb on - strand, within HP15_2097 at 2196.872 kb on - strand, within HP15_2097 at 2196.988 kb on - strand at 2197.078 kb on + strand at 2197.081 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. syringaldehyde 0.3125 mM remove 2,195,392 + HP15_2095 0.84 +0.0 2,195,728 - HP15_2096 0.29 +1.4 2,195,728 - HP15_2096 0.29 +0.1 2,195,821 + HP15_2096 0.48 +0.9 2,195,829 - HP15_2096 0.50 -0.8 2,195,829 - HP15_2096 0.50 -0.1 2,195,934 + HP15_2096 0.72 -0.2 2,195,955 + HP15_2096 0.77 -0.3 2,196,109 + +0.2 2,196,211 + -0.2 2,196,264 - HP15_2097 0.12 -0.1 2,196,643 - HP15_2097 0.55 +1.6 2,196,768 + HP15_2097 0.69 +0.6 2,196,776 - HP15_2097 0.70 +1.8 2,196,872 - HP15_2097 0.81 -0.1 2,196,872 - HP15_2097 0.81 +0.4 2,196,988 - -0.0 2,197,078 + -0.8 2,197,081 - +0.8
Or see this region's nucleotide sequence