Experiment: m.b. syringaldehyde 0.3125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1986 and HP15_1987 are separated by 170 nucleotides HP15_1987 and HP15_1988 overlap by 2 nucleotides HP15_1988 and HP15_1989 overlap by 4 nucleotides HP15_1989 and HP15_1990 overlap by 1 nucleotides HP15_1990 and HP15_1991 overlap by 4 nucleotides HP15_1991 and HP15_1992 are separated by 3 nucleotides
HP15_1986: HP15_1986 - hypothetical protein, at 2,098,377 to 2,098,625
_1986
HP15_1987: HP15_1987 - hypothetical protein, at 2,098,796 to 2,098,936
_1987
HP15_1988: HP15_1988 - hypothetical protein, at 2,098,935 to 2,099,276
_1988
HP15_1989: HP15_1989 - hypothetical protein, at 2,099,273 to 2,099,584
_1989
HP15_1990: HP15_1990 - hypothetical protein, at 2,099,584 to 2,099,829
_1990
HP15_1991: HP15_1991 - conserved hypothetical protein, at 2,099,826 to 2,100,191
_1991
HP15_1992: HP15_1992 - conserved hypothetical protein, at 2,100,195 to 2,101,061
_1992
Position (kb)
2099
2100 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2098.802 kb on - strand at 2098.807 kb on - strand at 2098.863 kb on - strand, within HP15_1987 at 2099.046 kb on + strand, within HP15_1988 at 2099.046 kb on + strand, within HP15_1988 at 2099.054 kb on - strand, within HP15_1988 at 2099.056 kb on + strand, within HP15_1988 at 2099.091 kb on + strand, within HP15_1988 at 2099.106 kb on + strand, within HP15_1988 at 2099.109 kb on - strand, within HP15_1988 at 2099.109 kb on - strand, within HP15_1988 at 2099.114 kb on - strand, within HP15_1988 at 2099.124 kb on - strand, within HP15_1988 at 2099.138 kb on - strand, within HP15_1988 at 2099.138 kb on - strand, within HP15_1988 at 2099.226 kb on - strand, within HP15_1988 at 2099.232 kb on - strand, within HP15_1988 at 2099.241 kb on - strand, within HP15_1988 at 2099.270 kb on - strand at 2099.278 kb on - strand at 2099.649 kb on - strand, within HP15_1990 at 2099.741 kb on - strand, within HP15_1990 at 2099.741 kb on - strand, within HP15_1990 at 2099.787 kb on - strand, within HP15_1990 at 2099.799 kb on - strand, within HP15_1990 at 2099.853 kb on - strand at 2099.943 kb on - strand, within HP15_1991 at 2099.953 kb on - strand, within HP15_1991 at 2099.953 kb on - strand, within HP15_1991 at 2100.006 kb on - strand, within HP15_1991 at 2100.218 kb on + strand at 2100.239 kb on + strand at 2100.262 kb on - strand at 2100.305 kb on + strand, within HP15_1992 at 2100.442 kb on - strand, within HP15_1992 at 2100.442 kb on - strand, within HP15_1992 at 2100.442 kb on - strand, within HP15_1992 at 2100.519 kb on - strand, within HP15_1992 at 2100.529 kb on + strand, within HP15_1992 at 2100.580 kb on + strand, within HP15_1992 at 2100.615 kb on - strand, within HP15_1992 at 2100.670 kb on - strand, within HP15_1992 at 2100.691 kb on + strand, within HP15_1992
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. syringaldehyde 0.3125 mM remove 2,098,802 - -0.4 2,098,807 - +1.8 2,098,863 - HP15_1987 0.48 +0.8 2,099,046 + HP15_1988 0.32 -0.2 2,099,046 + HP15_1988 0.32 +0.5 2,099,054 - HP15_1988 0.35 +0.1 2,099,056 + HP15_1988 0.35 -0.6 2,099,091 + HP15_1988 0.46 -0.7 2,099,106 + HP15_1988 0.50 -1.2 2,099,109 - HP15_1988 0.51 -0.7 2,099,109 - HP15_1988 0.51 -0.7 2,099,114 - HP15_1988 0.52 +0.9 2,099,124 - HP15_1988 0.55 -0.3 2,099,138 - HP15_1988 0.59 -0.1 2,099,138 - HP15_1988 0.59 +0.4 2,099,226 - HP15_1988 0.85 -0.7 2,099,232 - HP15_1988 0.87 -0.7 2,099,241 - HP15_1988 0.89 +2.4 2,099,270 - -0.2 2,099,278 - +0.5 2,099,649 - HP15_1990 0.26 +1.1 2,099,741 - HP15_1990 0.64 +0.4 2,099,741 - HP15_1990 0.64 +0.3 2,099,787 - HP15_1990 0.83 -0.1 2,099,799 - HP15_1990 0.87 +0.4 2,099,853 - +0.4 2,099,943 - HP15_1991 0.32 -2.5 2,099,953 - HP15_1991 0.35 +3.3 2,099,953 - HP15_1991 0.35 -1.3 2,100,006 - HP15_1991 0.49 -0.7 2,100,218 + -0.4 2,100,239 + +0.2 2,100,262 - +1.0 2,100,305 + HP15_1992 0.13 +1.1 2,100,442 - HP15_1992 0.28 -0.3 2,100,442 - HP15_1992 0.28 -0.4 2,100,442 - HP15_1992 0.28 +1.6 2,100,519 - HP15_1992 0.37 +0.2 2,100,529 + HP15_1992 0.39 -0.5 2,100,580 + HP15_1992 0.44 +0.7 2,100,615 - HP15_1992 0.48 +0.0 2,100,670 - HP15_1992 0.55 -1.0 2,100,691 + HP15_1992 0.57 +0.4
Or see this region's nucleotide sequence