Strain Fitness in Marinobacter adhaerens HP15 around HP15_1990

Experiment: m.b. syringaldehyde 0.3125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1986 and HP15_1987 are separated by 170 nucleotidesHP15_1987 and HP15_1988 overlap by 2 nucleotidesHP15_1988 and HP15_1989 overlap by 4 nucleotidesHP15_1989 and HP15_1990 overlap by 1 nucleotidesHP15_1990 and HP15_1991 overlap by 4 nucleotidesHP15_1991 and HP15_1992 are separated by 3 nucleotides HP15_1986: HP15_1986 - hypothetical protein, at 2,098,377 to 2,098,625 _1986 HP15_1987: HP15_1987 - hypothetical protein, at 2,098,796 to 2,098,936 _1987 HP15_1988: HP15_1988 - hypothetical protein, at 2,098,935 to 2,099,276 _1988 HP15_1989: HP15_1989 - hypothetical protein, at 2,099,273 to 2,099,584 _1989 HP15_1990: HP15_1990 - hypothetical protein, at 2,099,584 to 2,099,829 _1990 HP15_1991: HP15_1991 - conserved hypothetical protein, at 2,099,826 to 2,100,191 _1991 HP15_1992: HP15_1992 - conserved hypothetical protein, at 2,100,195 to 2,101,061 _1992 Position (kb) 2099 2100Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2098.802 kb on - strandat 2098.807 kb on - strandat 2098.863 kb on - strand, within HP15_1987at 2099.046 kb on + strand, within HP15_1988at 2099.046 kb on + strand, within HP15_1988at 2099.054 kb on - strand, within HP15_1988at 2099.056 kb on + strand, within HP15_1988at 2099.091 kb on + strand, within HP15_1988at 2099.106 kb on + strand, within HP15_1988at 2099.109 kb on - strand, within HP15_1988at 2099.109 kb on - strand, within HP15_1988at 2099.114 kb on - strand, within HP15_1988at 2099.124 kb on - strand, within HP15_1988at 2099.138 kb on - strand, within HP15_1988at 2099.138 kb on - strand, within HP15_1988at 2099.226 kb on - strand, within HP15_1988at 2099.232 kb on - strand, within HP15_1988at 2099.241 kb on - strand, within HP15_1988at 2099.270 kb on - strandat 2099.278 kb on - strandat 2099.649 kb on - strand, within HP15_1990at 2099.741 kb on - strand, within HP15_1990at 2099.741 kb on - strand, within HP15_1990at 2099.787 kb on - strand, within HP15_1990at 2099.799 kb on - strand, within HP15_1990at 2099.853 kb on - strandat 2099.943 kb on - strand, within HP15_1991at 2099.953 kb on - strand, within HP15_1991at 2099.953 kb on - strand, within HP15_1991at 2100.006 kb on - strand, within HP15_1991at 2100.218 kb on + strandat 2100.239 kb on + strandat 2100.262 kb on - strandat 2100.305 kb on + strand, within HP15_1992at 2100.442 kb on - strand, within HP15_1992at 2100.442 kb on - strand, within HP15_1992at 2100.442 kb on - strand, within HP15_1992at 2100.519 kb on - strand, within HP15_1992at 2100.529 kb on + strand, within HP15_1992at 2100.580 kb on + strand, within HP15_1992at 2100.615 kb on - strand, within HP15_1992at 2100.670 kb on - strand, within HP15_1992at 2100.691 kb on + strand, within HP15_1992

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. syringaldehyde 0.3125 mM
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2,098,802 - -0.4
2,098,807 - +1.8
2,098,863 - HP15_1987 0.48 +0.8
2,099,046 + HP15_1988 0.32 -0.2
2,099,046 + HP15_1988 0.32 +0.5
2,099,054 - HP15_1988 0.35 +0.1
2,099,056 + HP15_1988 0.35 -0.6
2,099,091 + HP15_1988 0.46 -0.7
2,099,106 + HP15_1988 0.50 -1.2
2,099,109 - HP15_1988 0.51 -0.7
2,099,109 - HP15_1988 0.51 -0.7
2,099,114 - HP15_1988 0.52 +0.9
2,099,124 - HP15_1988 0.55 -0.3
2,099,138 - HP15_1988 0.59 -0.1
2,099,138 - HP15_1988 0.59 +0.4
2,099,226 - HP15_1988 0.85 -0.7
2,099,232 - HP15_1988 0.87 -0.7
2,099,241 - HP15_1988 0.89 +2.4
2,099,270 - -0.2
2,099,278 - +0.5
2,099,649 - HP15_1990 0.26 +1.1
2,099,741 - HP15_1990 0.64 +0.4
2,099,741 - HP15_1990 0.64 +0.3
2,099,787 - HP15_1990 0.83 -0.1
2,099,799 - HP15_1990 0.87 +0.4
2,099,853 - +0.4
2,099,943 - HP15_1991 0.32 -2.5
2,099,953 - HP15_1991 0.35 +3.3
2,099,953 - HP15_1991 0.35 -1.3
2,100,006 - HP15_1991 0.49 -0.7
2,100,218 + -0.4
2,100,239 + +0.2
2,100,262 - +1.0
2,100,305 + HP15_1992 0.13 +1.1
2,100,442 - HP15_1992 0.28 -0.3
2,100,442 - HP15_1992 0.28 -0.4
2,100,442 - HP15_1992 0.28 +1.6
2,100,519 - HP15_1992 0.37 +0.2
2,100,529 + HP15_1992 0.39 -0.5
2,100,580 + HP15_1992 0.44 +0.7
2,100,615 - HP15_1992 0.48 +0.0
2,100,670 - HP15_1992 0.55 -1.0
2,100,691 + HP15_1992 0.57 +0.4

Or see this region's nucleotide sequence