Strain Fitness in Marinobacter adhaerens HP15 around HP15_1924

Experiment: m.b. syringaldehyde 0.3125 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1923 and HP15_1924 are separated by 0 nucleotidesHP15_1924 and HP15_1925 are separated by 126 nucleotides HP15_1923: HP15_1923 - PEP-CTERM locus polysaccharide chain length determinant, at 2,038,938 to 2,040,518 _1923 HP15_1924: HP15_1924 - polysaccharide export protein, at 2,040,519 to 2,041,067 _1924 HP15_1925: HP15_1925 - undecaprenyl-phosphate galactosephosphotransferase, at 2,041,194 to 2,042,552 _1925 Position (kb) 2040 2041 2042Strain fitness (log2 ratio) -2 -1 0 1 2at 2039.707 kb on + strand, within HP15_1923at 2039.779 kb on + strand, within HP15_1923at 2039.787 kb on + strand, within HP15_1923at 2039.787 kb on - strand, within HP15_1923at 2039.997 kb on - strand, within HP15_1923at 2040.067 kb on - strand, within HP15_1923at 2040.067 kb on - strand, within HP15_1923at 2040.152 kb on + strand, within HP15_1923at 2040.160 kb on - strand, within HP15_1923at 2040.214 kb on + strand, within HP15_1923at 2040.295 kb on + strand, within HP15_1923at 2040.337 kb on - strand, within HP15_1923at 2040.358 kb on + strand, within HP15_1923at 2040.358 kb on + strand, within HP15_1923at 2040.366 kb on - strandat 2040.366 kb on - strandat 2040.366 kb on - strandat 2040.671 kb on - strand, within HP15_1924at 2040.695 kb on + strand, within HP15_1924at 2040.723 kb on + strand, within HP15_1924at 2040.731 kb on - strand, within HP15_1924at 2040.731 kb on - strand, within HP15_1924at 2040.879 kb on - strand, within HP15_1924at 2040.980 kb on + strand, within HP15_1924at 2040.993 kb on - strand, within HP15_1924at 2041.024 kb on - strandat 2041.132 kb on + strandat 2041.140 kb on - strandat 2041.160 kb on + strandat 2041.335 kb on - strand, within HP15_1925at 2041.439 kb on + strand, within HP15_1925at 2041.450 kb on + strand, within HP15_1925at 2041.467 kb on + strand, within HP15_1925at 2041.540 kb on + strand, within HP15_1925at 2041.560 kb on + strand, within HP15_1925at 2041.798 kb on - strand, within HP15_1925at 2041.798 kb on - strand, within HP15_1925at 2041.886 kb on + strand, within HP15_1925at 2041.938 kb on + strand, within HP15_1925at 2041.946 kb on - strand, within HP15_1925at 2042.062 kb on - strand, within HP15_1925

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. syringaldehyde 0.3125 mM
remove
2,039,707 + HP15_1923 0.49 +0.5
2,039,779 + HP15_1923 0.53 +0.8
2,039,787 + HP15_1923 0.54 +0.0
2,039,787 - HP15_1923 0.54 -0.6
2,039,997 - HP15_1923 0.67 -0.2
2,040,067 - HP15_1923 0.71 -1.2
2,040,067 - HP15_1923 0.71 -0.2
2,040,152 + HP15_1923 0.77 +0.0
2,040,160 - HP15_1923 0.77 -0.4
2,040,214 + HP15_1923 0.81 +0.2
2,040,295 + HP15_1923 0.86 -0.4
2,040,337 - HP15_1923 0.88 -0.2
2,040,358 + HP15_1923 0.90 +1.2
2,040,358 + HP15_1923 0.90 +0.2
2,040,366 - -0.0
2,040,366 - -0.1
2,040,366 - -0.4
2,040,671 - HP15_1924 0.28 +2.5
2,040,695 + HP15_1924 0.32 +0.5
2,040,723 + HP15_1924 0.37 +0.4
2,040,731 - HP15_1924 0.39 -2.2
2,040,731 - HP15_1924 0.39 -0.2
2,040,879 - HP15_1924 0.66 +2.1
2,040,980 + HP15_1924 0.84 +0.2
2,040,993 - HP15_1924 0.86 -0.0
2,041,024 - -1.2
2,041,132 + -0.2
2,041,140 - -0.1
2,041,160 + -0.1
2,041,335 - HP15_1925 0.10 +0.7
2,041,439 + HP15_1925 0.18 -1.0
2,041,450 + HP15_1925 0.19 +0.2
2,041,467 + HP15_1925 0.20 -1.4
2,041,540 + HP15_1925 0.25 -1.7
2,041,560 + HP15_1925 0.27 +0.4
2,041,798 - HP15_1925 0.44 +0.1
2,041,798 - HP15_1925 0.44 -0.7
2,041,886 + HP15_1925 0.51 +0.4
2,041,938 + HP15_1925 0.55 +0.6
2,041,946 - HP15_1925 0.55 +0.2
2,042,062 - HP15_1925 0.64 -0.8

Or see this region's nucleotide sequence