Experiment: m.b. syringaldehyde 0.3125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1724 and HP15_1725 are separated by 40 nucleotides HP15_1725 and HP15_1726 overlap by 1 nucleotides HP15_1726 and HP15_1727 overlap by 4 nucleotides
HP15_1724: HP15_1724 - conserved hypothetical protein, at 1,823,756 to 1,824,154
_1724
HP15_1725: HP15_1725 - conserved hypothetical protein, at 1,824,195 to 1,824,863
_1725
HP15_1726: HP15_1726 - selenide water dikinase, at 1,824,863 to 1,827,139
_1726
HP15_1727: HP15_1727 - glycosyltransferase, at 1,827,136 to 1,828,110
_1727
Position (kb)
1824
1825
1826
1827
1828 Strain fitness (log2 ratio)
-1
0
1
2 at 1824.037 kb on + strand, within HP15_1724 at 1824.435 kb on + strand, within HP15_1725 at 1824.491 kb on + strand, within HP15_1725 at 1824.547 kb on - strand, within HP15_1725 at 1824.596 kb on + strand, within HP15_1725 at 1824.706 kb on - strand, within HP15_1725 at 1824.706 kb on - strand, within HP15_1725 at 1824.797 kb on + strand at 1824.870 kb on - strand at 1824.902 kb on - strand at 1825.250 kb on + strand, within HP15_1726 at 1825.250 kb on + strand, within HP15_1726 at 1825.287 kb on + strand, within HP15_1726 at 1825.375 kb on - strand, within HP15_1726 at 1825.412 kb on - strand, within HP15_1726 at 1825.485 kb on + strand, within HP15_1726 at 1825.485 kb on + strand, within HP15_1726 at 1825.493 kb on - strand, within HP15_1726 at 1825.493 kb on - strand, within HP15_1726 at 1825.582 kb on - strand, within HP15_1726 at 1825.604 kb on - strand, within HP15_1726 at 1825.626 kb on + strand, within HP15_1726 at 1825.629 kb on - strand, within HP15_1726 at 1825.690 kb on + strand, within HP15_1726 at 1825.690 kb on + strand, within HP15_1726 at 1825.807 kb on + strand, within HP15_1726 at 1825.897 kb on + strand, within HP15_1726 at 1825.900 kb on - strand, within HP15_1726 at 1826.033 kb on + strand, within HP15_1726 at 1826.102 kb on + strand, within HP15_1726 at 1826.142 kb on - strand, within HP15_1726 at 1826.175 kb on - strand, within HP15_1726 at 1826.252 kb on + strand, within HP15_1726 at 1826.260 kb on - strand, within HP15_1726 at 1826.503 kb on + strand, within HP15_1726 at 1826.516 kb on + strand, within HP15_1726 at 1826.524 kb on - strand, within HP15_1726 at 1826.640 kb on + strand, within HP15_1726 at 1826.781 kb on - strand, within HP15_1726 at 1826.794 kb on + strand, within HP15_1726 at 1827.016 kb on + strand at 1827.021 kb on + strand at 1827.023 kb on + strand at 1827.041 kb on - strand at 1827.058 kb on - strand at 1827.097 kb on + strand at 1827.119 kb on + strand at 1827.144 kb on + strand at 1827.152 kb on - strand at 1827.154 kb on + strand at 1827.154 kb on + strand at 1827.154 kb on + strand at 1827.172 kb on - strand at 1827.275 kb on + strand, within HP15_1727 at 1827.433 kb on - strand, within HP15_1727 at 1827.562 kb on + strand, within HP15_1727 at 1827.623 kb on + strand, within HP15_1727 at 1827.631 kb on - strand, within HP15_1727 at 1827.800 kb on - strand, within HP15_1727 at 1827.902 kb on - strand, within HP15_1727 at 1828.022 kb on - strand at 1828.046 kb on + strand at 1828.067 kb on + strand at 1828.100 kb on + strand at 1828.124 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. syringaldehyde 0.3125 mM remove 1,824,037 + HP15_1724 0.70 -1.3 1,824,435 + HP15_1725 0.36 +0.1 1,824,491 + HP15_1725 0.44 -0.3 1,824,547 - HP15_1725 0.53 +0.7 1,824,596 + HP15_1725 0.60 +0.1 1,824,706 - HP15_1725 0.76 +2.3 1,824,706 - HP15_1725 0.76 +2.5 1,824,797 + +0.5 1,824,870 - +0.8 1,824,902 - +0.5 1,825,250 + HP15_1726 0.17 -0.7 1,825,250 + HP15_1726 0.17 -0.9 1,825,287 + HP15_1726 0.19 +0.1 1,825,375 - HP15_1726 0.22 -0.5 1,825,412 - HP15_1726 0.24 -0.3 1,825,485 + HP15_1726 0.27 +2.0 1,825,485 + HP15_1726 0.27 +1.1 1,825,493 - HP15_1726 0.28 +0.7 1,825,493 - HP15_1726 0.28 +0.1 1,825,582 - HP15_1726 0.32 -0.9 1,825,604 - HP15_1726 0.33 +0.4 1,825,626 + HP15_1726 0.34 +0.2 1,825,629 - HP15_1726 0.34 +0.2 1,825,690 + HP15_1726 0.36 +0.8 1,825,690 + HP15_1726 0.36 -0.3 1,825,807 + HP15_1726 0.41 -0.4 1,825,897 + HP15_1726 0.45 -1.3 1,825,900 - HP15_1726 0.46 -0.0 1,826,033 + HP15_1726 0.51 -0.4 1,826,102 + HP15_1726 0.54 -0.5 1,826,142 - HP15_1726 0.56 -0.5 1,826,175 - HP15_1726 0.58 +0.3 1,826,252 + HP15_1726 0.61 -1.5 1,826,260 - HP15_1726 0.61 -0.2 1,826,503 + HP15_1726 0.72 +0.2 1,826,516 + HP15_1726 0.73 -1.4 1,826,524 - HP15_1726 0.73 +0.2 1,826,640 + HP15_1726 0.78 +1.3 1,826,781 - HP15_1726 0.84 -0.6 1,826,794 + HP15_1726 0.85 +1.4 1,827,016 + -0.1 1,827,021 + -1.1 1,827,023 + +0.1 1,827,041 - +0.2 1,827,058 - -0.0 1,827,097 + +0.5 1,827,119 + +0.3 1,827,144 + -0.2 1,827,152 - +0.2 1,827,154 + -0.7 1,827,154 + +1.1 1,827,154 + -0.2 1,827,172 - -0.6 1,827,275 + HP15_1727 0.14 -0.2 1,827,433 - HP15_1727 0.30 -0.7 1,827,562 + HP15_1727 0.44 -0.7 1,827,623 + HP15_1727 0.50 -0.3 1,827,631 - HP15_1727 0.51 -0.9 1,827,800 - HP15_1727 0.68 -1.0 1,827,902 - HP15_1727 0.79 +1.2 1,828,022 - +0.9 1,828,046 + +2.1 1,828,067 + +2.1 1,828,100 + -0.3 1,828,124 + +1.3
Or see this region's nucleotide sequence