Experiment: m.b. syringaldehyde 0.3125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1636 and HP15_1637 are separated by 115 nucleotides HP15_1637 and HP15_1638 are separated by 85 nucleotides HP15_1638 and HP15_1639 are separated by 5 nucleotides HP15_1639 and HP15_1640 are separated by 181 nucleotides
HP15_1636: HP15_1636 - NADP-dependent isocitrate dehydrogenase-like protein, at 1,736,284 to 1,738,002
_1636
HP15_1637: HP15_1637 - methyl-accepting chemotaxis sensory transducer, at 1,738,118 to 1,738,555
_1637
HP15_1638: HP15_1638 - protein containing pyridoxamine 5'-phosphate oxidase-related, FMN-binding core domain, at 1,738,641 to 1,739,210
_1638
HP15_1639: HP15_1639 - MarR family transcriptional regulator-like protein, at 1,739,216 to 1,739,677
_1639
HP15_1640: HP15_1640 - transcriptional regulator, LysR family protein, at 1,739,859 to 1,740,839
_1640
Position (kb)
1738
1739
1740 Strain fitness (log2 ratio)
-1
0
1
2 at 1737.649 kb on - strand, within HP15_1636 at 1737.706 kb on + strand, within HP15_1636 at 1737.706 kb on + strand, within HP15_1636 at 1737.714 kb on - strand, within HP15_1636 at 1737.727 kb on - strand, within HP15_1636 at 1737.753 kb on + strand, within HP15_1636 at 1737.806 kb on - strand, within HP15_1636 at 1737.817 kb on - strand, within HP15_1636 at 1737.864 kb on + strand at 1737.872 kb on - strand at 1737.968 kb on + strand at 1738.063 kb on + strand at 1738.069 kb on - strand at 1738.102 kb on - strand at 1738.109 kb on - strand at 1738.176 kb on - strand, within HP15_1637 at 1738.176 kb on - strand, within HP15_1637 at 1738.279 kb on + strand, within HP15_1637 at 1738.315 kb on + strand, within HP15_1637 at 1738.402 kb on - strand, within HP15_1637 at 1738.533 kb on - strand at 1738.538 kb on - strand at 1738.572 kb on + strand at 1738.572 kb on + strand at 1738.572 kb on + strand at 1738.580 kb on - strand at 1738.580 kb on - strand at 1738.590 kb on - strand at 1738.698 kb on + strand, within HP15_1638 at 1738.777 kb on + strand, within HP15_1638 at 1738.867 kb on + strand, within HP15_1638 at 1739.009 kb on + strand, within HP15_1638 at 1739.040 kb on - strand, within HP15_1638 at 1739.112 kb on - strand, within HP15_1638 at 1739.141 kb on + strand, within HP15_1638 at 1739.141 kb on + strand, within HP15_1638 at 1739.143 kb on + strand, within HP15_1638 at 1739.149 kb on - strand, within HP15_1638 at 1739.151 kb on - strand, within HP15_1638 at 1739.157 kb on - strand at 1739.180 kb on + strand at 1739.266 kb on + strand, within HP15_1639 at 1739.496 kb on - strand, within HP15_1639 at 1739.537 kb on - strand, within HP15_1639 at 1739.539 kb on + strand, within HP15_1639 at 1739.759 kb on - strand at 1739.894 kb on - strand at 1739.957 kb on - strand, within HP15_1640 at 1740.056 kb on - strand, within HP15_1640
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. syringaldehyde 0.3125 mM remove 1,737,649 - HP15_1636 0.79 +1.7 1,737,706 + HP15_1636 0.83 +0.5 1,737,706 + HP15_1636 0.83 -0.4 1,737,714 - HP15_1636 0.83 +0.6 1,737,727 - HP15_1636 0.84 -1.1 1,737,753 + HP15_1636 0.85 +1.2 1,737,806 - HP15_1636 0.89 -0.6 1,737,817 - HP15_1636 0.89 +0.3 1,737,864 + -0.4 1,737,872 - +0.2 1,737,968 + -1.2 1,738,063 + +0.1 1,738,069 - +2.2 1,738,102 - +0.7 1,738,109 - -1.6 1,738,176 - HP15_1637 0.13 -1.0 1,738,176 - HP15_1637 0.13 +0.2 1,738,279 + HP15_1637 0.37 -1.1 1,738,315 + HP15_1637 0.45 -0.4 1,738,402 - HP15_1637 0.65 +0.1 1,738,533 - -0.8 1,738,538 - -0.8 1,738,572 + -1.0 1,738,572 + +0.1 1,738,572 + +0.7 1,738,580 - +1.9 1,738,580 - +0.7 1,738,590 - +0.2 1,738,698 + HP15_1638 0.10 +0.0 1,738,777 + HP15_1638 0.24 -0.7 1,738,867 + HP15_1638 0.40 -0.3 1,739,009 + HP15_1638 0.65 -1.0 1,739,040 - HP15_1638 0.70 +1.2 1,739,112 - HP15_1638 0.83 -0.8 1,739,141 + HP15_1638 0.88 -0.5 1,739,141 + HP15_1638 0.88 +1.3 1,739,143 + HP15_1638 0.88 -0.9 1,739,149 - HP15_1638 0.89 -0.0 1,739,151 - HP15_1638 0.89 +0.0 1,739,157 - -0.2 1,739,180 + +0.3 1,739,266 + HP15_1639 0.11 -0.7 1,739,496 - HP15_1639 0.61 -0.3 1,739,537 - HP15_1639 0.69 -0.6 1,739,539 + HP15_1639 0.70 +0.3 1,739,759 - +0.0 1,739,894 - -1.3 1,739,957 - HP15_1640 0.10 -0.3 1,740,056 - HP15_1640 0.20 -0.2
Or see this region's nucleotide sequence