Strain Fitness in Marinobacter adhaerens HP15 around HP15_1638

Experiment: m.b. syringaldehyde 0.3125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1636 and HP15_1637 are separated by 115 nucleotidesHP15_1637 and HP15_1638 are separated by 85 nucleotidesHP15_1638 and HP15_1639 are separated by 5 nucleotidesHP15_1639 and HP15_1640 are separated by 181 nucleotides HP15_1636: HP15_1636 - NADP-dependent isocitrate dehydrogenase-like protein, at 1,736,284 to 1,738,002 _1636 HP15_1637: HP15_1637 - methyl-accepting chemotaxis sensory transducer, at 1,738,118 to 1,738,555 _1637 HP15_1638: HP15_1638 - protein containing pyridoxamine 5'-phosphate oxidase-related, FMN-binding core domain, at 1,738,641 to 1,739,210 _1638 HP15_1639: HP15_1639 - MarR family transcriptional regulator-like protein, at 1,739,216 to 1,739,677 _1639 HP15_1640: HP15_1640 - transcriptional regulator, LysR family protein, at 1,739,859 to 1,740,839 _1640 Position (kb) 1738 1739 1740Strain fitness (log2 ratio) -1 0 1 2at 1737.649 kb on - strand, within HP15_1636at 1737.706 kb on + strand, within HP15_1636at 1737.706 kb on + strand, within HP15_1636at 1737.714 kb on - strand, within HP15_1636at 1737.727 kb on - strand, within HP15_1636at 1737.753 kb on + strand, within HP15_1636at 1737.806 kb on - strand, within HP15_1636at 1737.817 kb on - strand, within HP15_1636at 1737.864 kb on + strandat 1737.872 kb on - strandat 1737.968 kb on + strandat 1738.063 kb on + strandat 1738.069 kb on - strandat 1738.102 kb on - strandat 1738.109 kb on - strandat 1738.176 kb on - strand, within HP15_1637at 1738.176 kb on - strand, within HP15_1637at 1738.279 kb on + strand, within HP15_1637at 1738.315 kb on + strand, within HP15_1637at 1738.402 kb on - strand, within HP15_1637at 1738.533 kb on - strandat 1738.538 kb on - strandat 1738.572 kb on + strandat 1738.572 kb on + strandat 1738.572 kb on + strandat 1738.580 kb on - strandat 1738.580 kb on - strandat 1738.590 kb on - strandat 1738.698 kb on + strand, within HP15_1638at 1738.777 kb on + strand, within HP15_1638at 1738.867 kb on + strand, within HP15_1638at 1739.009 kb on + strand, within HP15_1638at 1739.040 kb on - strand, within HP15_1638at 1739.112 kb on - strand, within HP15_1638at 1739.141 kb on + strand, within HP15_1638at 1739.141 kb on + strand, within HP15_1638at 1739.143 kb on + strand, within HP15_1638at 1739.149 kb on - strand, within HP15_1638at 1739.151 kb on - strand, within HP15_1638at 1739.157 kb on - strandat 1739.180 kb on + strandat 1739.266 kb on + strand, within HP15_1639at 1739.496 kb on - strand, within HP15_1639at 1739.537 kb on - strand, within HP15_1639at 1739.539 kb on + strand, within HP15_1639at 1739.759 kb on - strandat 1739.894 kb on - strandat 1739.957 kb on - strand, within HP15_1640at 1740.056 kb on - strand, within HP15_1640

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. syringaldehyde 0.3125 mM
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1,737,649 - HP15_1636 0.79 +1.7
1,737,706 + HP15_1636 0.83 +0.5
1,737,706 + HP15_1636 0.83 -0.4
1,737,714 - HP15_1636 0.83 +0.6
1,737,727 - HP15_1636 0.84 -1.1
1,737,753 + HP15_1636 0.85 +1.2
1,737,806 - HP15_1636 0.89 -0.6
1,737,817 - HP15_1636 0.89 +0.3
1,737,864 + -0.4
1,737,872 - +0.2
1,737,968 + -1.2
1,738,063 + +0.1
1,738,069 - +2.2
1,738,102 - +0.7
1,738,109 - -1.6
1,738,176 - HP15_1637 0.13 -1.0
1,738,176 - HP15_1637 0.13 +0.2
1,738,279 + HP15_1637 0.37 -1.1
1,738,315 + HP15_1637 0.45 -0.4
1,738,402 - HP15_1637 0.65 +0.1
1,738,533 - -0.8
1,738,538 - -0.8
1,738,572 + -1.0
1,738,572 + +0.1
1,738,572 + +0.7
1,738,580 - +1.9
1,738,580 - +0.7
1,738,590 - +0.2
1,738,698 + HP15_1638 0.10 +0.0
1,738,777 + HP15_1638 0.24 -0.7
1,738,867 + HP15_1638 0.40 -0.3
1,739,009 + HP15_1638 0.65 -1.0
1,739,040 - HP15_1638 0.70 +1.2
1,739,112 - HP15_1638 0.83 -0.8
1,739,141 + HP15_1638 0.88 -0.5
1,739,141 + HP15_1638 0.88 +1.3
1,739,143 + HP15_1638 0.88 -0.9
1,739,149 - HP15_1638 0.89 -0.0
1,739,151 - HP15_1638 0.89 +0.0
1,739,157 - -0.2
1,739,180 + +0.3
1,739,266 + HP15_1639 0.11 -0.7
1,739,496 - HP15_1639 0.61 -0.3
1,739,537 - HP15_1639 0.69 -0.6
1,739,539 + HP15_1639 0.70 +0.3
1,739,759 - +0.0
1,739,894 - -1.3
1,739,957 - HP15_1640 0.10 -0.3
1,740,056 - HP15_1640 0.20 -0.2

Or see this region's nucleotide sequence