Strain Fitness in Marinobacter adhaerens HP15 around HP15_1592

Experiment: m.b. syringaldehyde 0.3125 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1591 and HP15_1592 overlap by 8 nucleotidesHP15_1592 and HP15_1593 are separated by 13 nucleotides HP15_1591: HP15_1591 - conserved hypothetical protein, at 1,685,112 to 1,686,512 _1591 HP15_1592: HP15_1592 - conserved hypothetical protein, at 1,686,505 to 1,687,074 _1592 HP15_1593: HP15_1593 - patatin-like phospholipase domain-containing protein, at 1,687,088 to 1,688,560 _1593 Position (kb) 1686 1687 1688Strain fitness (log2 ratio) -2 -1 0 1 2at 1685.535 kb on - strand, within HP15_1591at 1685.614 kb on - strand, within HP15_1591at 1685.698 kb on + strand, within HP15_1591at 1685.698 kb on + strand, within HP15_1591at 1685.698 kb on + strand, within HP15_1591at 1685.706 kb on - strand, within HP15_1591at 1685.738 kb on - strand, within HP15_1591at 1685.879 kb on + strand, within HP15_1591at 1685.887 kb on - strand, within HP15_1591at 1685.887 kb on - strand, within HP15_1591at 1685.951 kb on + strand, within HP15_1591at 1685.954 kb on - strand, within HP15_1591at 1686.040 kb on + strand, within HP15_1591at 1686.170 kb on - strand, within HP15_1591at 1686.238 kb on + strand, within HP15_1591at 1686.442 kb on + strandat 1686.498 kb on - strandat 1686.605 kb on + strand, within HP15_1592at 1686.820 kb on - strand, within HP15_1592at 1686.835 kb on + strand, within HP15_1592at 1686.924 kb on - strand, within HP15_1592at 1686.933 kb on + strand, within HP15_1592at 1687.001 kb on - strand, within HP15_1592at 1687.084 kb on - strandat 1687.338 kb on + strand, within HP15_1593at 1687.346 kb on - strand, within HP15_1593at 1687.376 kb on - strand, within HP15_1593at 1687.376 kb on - strand, within HP15_1593at 1687.508 kb on + strand, within HP15_1593at 1687.511 kb on - strand, within HP15_1593at 1687.511 kb on - strand, within HP15_1593at 1687.759 kb on + strand, within HP15_1593at 1687.807 kb on + strand, within HP15_1593at 1687.873 kb on + strand, within HP15_1593at 1687.880 kb on + strand, within HP15_1593at 1688.070 kb on - strand, within HP15_1593

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. syringaldehyde 0.3125 mM
remove
1,685,535 - HP15_1591 0.30 -1.2
1,685,614 - HP15_1591 0.36 +0.4
1,685,698 + HP15_1591 0.42 -1.7
1,685,698 + HP15_1591 0.42 -0.3
1,685,698 + HP15_1591 0.42 +0.9
1,685,706 - HP15_1591 0.42 +1.7
1,685,738 - HP15_1591 0.45 +0.1
1,685,879 + HP15_1591 0.55 -1.0
1,685,887 - HP15_1591 0.55 +0.0
1,685,887 - HP15_1591 0.55 -1.3
1,685,951 + HP15_1591 0.60 +0.3
1,685,954 - HP15_1591 0.60 -1.3
1,686,040 + HP15_1591 0.66 +0.6
1,686,170 - HP15_1591 0.76 -0.6
1,686,238 + HP15_1591 0.80 +0.3
1,686,442 + +1.3
1,686,498 - +2.3
1,686,605 + HP15_1592 0.18 -0.6
1,686,820 - HP15_1592 0.55 +0.8
1,686,835 + HP15_1592 0.58 -0.6
1,686,924 - HP15_1592 0.74 -2.3
1,686,933 + HP15_1592 0.75 +0.5
1,687,001 - HP15_1592 0.87 -0.4
1,687,084 - +0.4
1,687,338 + HP15_1593 0.17 +0.4
1,687,346 - HP15_1593 0.18 +0.3
1,687,376 - HP15_1593 0.20 +1.7
1,687,376 - HP15_1593 0.20 -0.8
1,687,508 + HP15_1593 0.29 -0.6
1,687,511 - HP15_1593 0.29 +0.4
1,687,511 - HP15_1593 0.29 +0.3
1,687,759 + HP15_1593 0.46 -1.3
1,687,807 + HP15_1593 0.49 +1.0
1,687,873 + HP15_1593 0.53 +0.9
1,687,880 + HP15_1593 0.54 +0.7
1,688,070 - HP15_1593 0.67 +1.7

Or see this region's nucleotide sequence