Experiment: Cobalt chloride 0.06 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1377 and Psest_1378 are separated by 12 nucleotides Psest_1378 and Psest_1379 are separated by 58 nucleotides Psest_1379 and Psest_1380 are separated by 214 nucleotides
Psest_1377: Psest_1377 - hypothetical protein, at 1,487,077 to 1,487,757
_1377
Psest_1378: Psest_1378 - hypothetical protein, at 1,487,770 to 1,488,501
_1378
Psest_1379: Psest_1379 - hypothetical protein, at 1,488,560 to 1,488,916
_1379
Psest_1380: Psest_1380 - Di- and tricarboxylate transporters, at 1,489,131 to 1,490,978
_1380
Position (kb)
1488
1489 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 1487.634 kb on - strand, within Psest_1377 at 1487.753 kb on + strand at 1487.753 kb on + strand at 1487.753 kb on + strand at 1487.753 kb on + strand at 1487.753 kb on + strand at 1487.753 kb on + strand at 1487.753 kb on + strand at 1487.753 kb on + strand at 1487.753 kb on + strand at 1487.753 kb on + strand at 1487.754 kb on - strand at 1487.754 kb on - strand at 1487.754 kb on - strand at 1487.754 kb on - strand at 1487.754 kb on - strand at 1487.754 kb on - strand at 1487.754 kb on - strand at 1487.757 kb on + strand at 1487.758 kb on - strand at 1487.849 kb on + strand, within Psest_1378 at 1487.849 kb on + strand, within Psest_1378 at 1487.849 kb on + strand, within Psest_1378 at 1487.849 kb on + strand, within Psest_1378 at 1487.849 kb on + strand, within Psest_1378 at 1487.849 kb on + strand, within Psest_1378 at 1487.849 kb on + strand, within Psest_1378 at 1487.850 kb on - strand, within Psest_1378 at 1487.850 kb on - strand, within Psest_1378 at 1487.850 kb on - strand, within Psest_1378 at 1487.921 kb on - strand, within Psest_1378 at 1488.057 kb on + strand, within Psest_1378 at 1488.057 kb on + strand, within Psest_1378 at 1488.058 kb on - strand, within Psest_1378 at 1488.113 kb on + strand, within Psest_1378 at 1488.224 kb on + strand, within Psest_1378 at 1488.224 kb on + strand, within Psest_1378 at 1488.224 kb on + strand, within Psest_1378 at 1488.320 kb on + strand, within Psest_1378 at 1488.320 kb on + strand, within Psest_1378 at 1488.320 kb on + strand, within Psest_1378 at 1488.320 kb on + strand, within Psest_1378 at 1488.320 kb on + strand, within Psest_1378 at 1488.321 kb on - strand, within Psest_1378 at 1488.321 kb on - strand, within Psest_1378 at 1488.321 kb on - strand, within Psest_1378 at 1488.321 kb on - strand, within Psest_1378 at 1488.321 kb on - strand, within Psest_1378 at 1488.321 kb on - strand, within Psest_1378 at 1488.321 kb on - strand, within Psest_1378 at 1488.464 kb on + strand at 1488.464 kb on + strand at 1488.561 kb on + strand at 1488.562 kb on - strand at 1488.562 kb on - strand at 1488.708 kb on - strand, within Psest_1379 at 1489.080 kb on - strand at 1489.080 kb on - strand at 1489.082 kb on + strand at 1489.082 kb on + strand at 1489.082 kb on + strand at 1489.082 kb on + strand at 1489.083 kb on - strand at 1489.551 kb on + strand, within Psest_1380 at 1489.571 kb on + strand, within Psest_1380 at 1489.572 kb on - strand, within Psest_1380 at 1489.580 kb on - strand, within Psest_1380 at 1489.710 kb on + strand, within Psest_1380 at 1489.710 kb on + strand, within Psest_1380 at 1489.710 kb on + strand, within Psest_1380 at 1489.710 kb on + strand, within Psest_1380 at 1489.710 kb on + strand, within Psest_1380 at 1489.710 kb on + strand, within Psest_1380 at 1489.711 kb on - strand, within Psest_1380 at 1489.711 kb on - strand, within Psest_1380 at 1489.711 kb on - strand, within Psest_1380 at 1489.711 kb on - strand, within Psest_1380 at 1489.711 kb on - strand, within Psest_1380 at 1489.711 kb on - strand, within Psest_1380 at 1489.711 kb on - strand, within Psest_1380
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.06 mM remove 1,487,634 - Psest_1377 0.82 +4.9 1,487,753 + +0.6 1,487,753 + -0.5 1,487,753 + +0.1 1,487,753 + -1.4 1,487,753 + +0.5 1,487,753 + +0.0 1,487,753 + -0.3 1,487,753 + -0.1 1,487,753 + +0.2 1,487,753 + -0.2 1,487,754 - +2.7 1,487,754 - -0.4 1,487,754 - +2.2 1,487,754 - +3.2 1,487,754 - +2.4 1,487,754 - +2.2 1,487,754 - +1.4 1,487,757 + +0.9 1,487,758 - +3.7 1,487,849 + Psest_1378 0.11 +0.3 1,487,849 + Psest_1378 0.11 +0.4 1,487,849 + Psest_1378 0.11 +0.2 1,487,849 + Psest_1378 0.11 +0.3 1,487,849 + Psest_1378 0.11 +0.9 1,487,849 + Psest_1378 0.11 +0.2 1,487,849 + Psest_1378 0.11 +1.9 1,487,850 - Psest_1378 0.11 +8.5 1,487,850 - Psest_1378 0.11 +7.6 1,487,850 - Psest_1378 0.11 +6.4 1,487,921 - Psest_1378 0.21 +7.9 1,488,057 + Psest_1378 0.39 -0.9 1,488,057 + Psest_1378 0.39 -2.2 1,488,058 - Psest_1378 0.39 +6.4 1,488,113 + Psest_1378 0.47 +0.3 1,488,224 + Psest_1378 0.62 -2.0 1,488,224 + Psest_1378 0.62 -1.1 1,488,224 + Psest_1378 0.62 -2.2 1,488,320 + Psest_1378 0.75 +1.4 1,488,320 + Psest_1378 0.75 -0.4 1,488,320 + Psest_1378 0.75 -0.6 1,488,320 + Psest_1378 0.75 +0.9 1,488,320 + Psest_1378 0.75 -2.5 1,488,321 - Psest_1378 0.75 +6.7 1,488,321 - Psest_1378 0.75 +6.2 1,488,321 - Psest_1378 0.75 +3.0 1,488,321 - Psest_1378 0.75 +6.9 1,488,321 - Psest_1378 0.75 +6.1 1,488,321 - Psest_1378 0.75 +6.6 1,488,321 - Psest_1378 0.75 +5.9 1,488,464 + -1.4 1,488,464 + -1.1 1,488,561 + +0.5 1,488,562 - +7.7 1,488,562 - +7.2 1,488,708 - Psest_1379 0.41 +2.2 1,489,080 - +3.5 1,489,080 - +1.7 1,489,082 + -0.9 1,489,082 + -0.1 1,489,082 + -1.6 1,489,082 + +0.9 1,489,083 - +1.5 1,489,551 + Psest_1380 0.23 +0.9 1,489,571 + Psest_1380 0.24 -0.6 1,489,572 - Psest_1380 0.24 +1.5 1,489,580 - Psest_1380 0.24 +0.2 1,489,710 + Psest_1380 0.31 +0.9 1,489,710 + Psest_1380 0.31 +0.9 1,489,710 + Psest_1380 0.31 +0.5 1,489,710 + Psest_1380 0.31 +0.4 1,489,710 + Psest_1380 0.31 -0.6 1,489,710 + Psest_1380 0.31 -0.1 1,489,711 - Psest_1380 0.31 +0.7 1,489,711 - Psest_1380 0.31 -2.8 1,489,711 - Psest_1380 0.31 +0.4 1,489,711 - Psest_1380 0.31 +0.3 1,489,711 - Psest_1380 0.31 -0.6 1,489,711 - Psest_1380 0.31 +0.3 1,489,711 - Psest_1380 0.31 -0.2
Or see this region's nucleotide sequence