Experiment: m.b. syringaldehyde 0.3125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1048 and HP15_1049 overlap by 4 nucleotides HP15_1049 and HP15_1050 are separated by 240 nucleotides HP15_1050 and HP15_1051 are separated by 15 nucleotides
HP15_1048: HP15_1048 - recombinase A, at 1,069,781 to 1,070,827
_1048
HP15_1049: HP15_1049 - hypothetical protein, at 1,070,824 to 1,071,084
_1049
HP15_1050: HP15_1050 - conserved hypothetical protein, at 1,071,325 to 1,071,795
_1050
HP15_1051: HP15_1051 - conserved hypothetical protein, at 1,071,811 to 1,072,188
_1051
Position (kb)
1070
1071
1072 Strain fitness (log2 ratio)
-2
-1
0
1 at 1070.115 kb on + strand, within HP15_1048 at 1070.691 kb on - strand, within HP15_1048 at 1070.761 kb on + strand at 1070.766 kb on + strand at 1070.797 kb on - strand at 1070.821 kb on + strand at 1070.829 kb on - strand at 1070.872 kb on - strand, within HP15_1049 at 1071.025 kb on + strand, within HP15_1049 at 1071.036 kb on - strand, within HP15_1049 at 1071.039 kb on + strand, within HP15_1049 at 1071.200 kb on + strand at 1071.203 kb on - strand at 1071.216 kb on - strand at 1071.241 kb on - strand at 1071.245 kb on + strand at 1071.253 kb on - strand at 1071.299 kb on - strand at 1071.356 kb on + strand at 1071.364 kb on - strand at 1071.413 kb on + strand, within HP15_1050 at 1071.431 kb on - strand, within HP15_1050 at 1071.439 kb on - strand, within HP15_1050 at 1071.478 kb on + strand, within HP15_1050 at 1071.478 kb on + strand, within HP15_1050 at 1071.486 kb on - strand, within HP15_1050 at 1071.571 kb on - strand, within HP15_1050 at 1071.631 kb on - strand, within HP15_1050 at 1071.764 kb on - strand at 1071.803 kb on + strand at 1071.852 kb on + strand, within HP15_1051 at 1071.864 kb on - strand, within HP15_1051 at 1071.935 kb on + strand, within HP15_1051 at 1071.964 kb on - strand, within HP15_1051 at 1071.984 kb on - strand, within HP15_1051 at 1072.070 kb on - strand, within HP15_1051
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. syringaldehyde 0.3125 mM remove 1,070,115 + HP15_1048 0.32 -0.9 1,070,691 - HP15_1048 0.87 -1.0 1,070,761 + +0.8 1,070,766 + -1.5 1,070,797 - +0.7 1,070,821 + +0.7 1,070,829 - -1.8 1,070,872 - HP15_1049 0.18 -0.9 1,071,025 + HP15_1049 0.77 -0.5 1,071,036 - HP15_1049 0.81 -0.8 1,071,039 + HP15_1049 0.82 -0.7 1,071,200 + -1.0 1,071,203 - -1.4 1,071,216 - +0.1 1,071,241 - -0.5 1,071,245 + +0.8 1,071,253 - -0.4 1,071,299 - -0.5 1,071,356 + +1.4 1,071,364 - +0.2 1,071,413 + HP15_1050 0.19 +0.4 1,071,431 - HP15_1050 0.23 -0.9 1,071,439 - HP15_1050 0.24 -0.8 1,071,478 + HP15_1050 0.32 +0.2 1,071,478 + HP15_1050 0.32 -0.3 1,071,486 - HP15_1050 0.34 +0.3 1,071,571 - HP15_1050 0.52 +0.4 1,071,631 - HP15_1050 0.65 -0.4 1,071,764 - +0.8 1,071,803 + -0.9 1,071,852 + HP15_1051 0.11 +1.4 1,071,864 - HP15_1051 0.14 -1.0 1,071,935 + HP15_1051 0.33 -0.3 1,071,964 - HP15_1051 0.40 +0.6 1,071,984 - HP15_1051 0.46 -0.1 1,072,070 - HP15_1051 0.69 -0.1
Or see this region's nucleotide sequence