Strain Fitness in Shewanella amazonensis SB2B around Sama_0729

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0728 and Sama_0729 are separated by 371 nucleotidesSama_0729 and Sama_0730 are separated by 33 nucleotides Sama_0728: Sama_0728 - putative nitric oxide reductase (subunit B) transmembrane protein (RefSeq), at 894,026 to 896,302 _0728 Sama_0729: Sama_0729 - potassium/proton antiporter (RefSeq), at 896,674 to 898,392 _0729 Sama_0730: Sama_0730 - lipid A biosynthesis lauroyl acyltransferase (RefSeq), at 898,426 to 899,373 _0730 Position (kb) 896 897 898 899Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 895.719 kb on - strand, within Sama_0728at 895.779 kb on + strand, within Sama_0728at 895.780 kb on - strand, within Sama_0728at 895.780 kb on - strand, within Sama_0728at 895.830 kb on + strand, within Sama_0728at 895.830 kb on + strand, within Sama_0728at 895.830 kb on + strand, within Sama_0728at 895.830 kb on + strand, within Sama_0728at 895.830 kb on + strand, within Sama_0728at 895.830 kb on + strand, within Sama_0728at 895.830 kb on + strand, within Sama_0728at 895.831 kb on - strand, within Sama_0728at 895.831 kb on - strand, within Sama_0728at 895.831 kb on - strand, within Sama_0728at 895.831 kb on - strand, within Sama_0728at 895.831 kb on - strand, within Sama_0728at 895.831 kb on - strand, within Sama_0728at 895.831 kb on - strand, within Sama_0728at 895.831 kb on - strand, within Sama_0728at 895.852 kb on + strand, within Sama_0728at 895.852 kb on + strand, within Sama_0728at 895.903 kb on + strand, within Sama_0728at 895.904 kb on - strand, within Sama_0728at 895.924 kb on + strand, within Sama_0728at 895.924 kb on + strand, within Sama_0728at 895.924 kb on + strand, within Sama_0728at 895.925 kb on - strand, within Sama_0728at 895.925 kb on - strand, within Sama_0728at 895.966 kb on + strand, within Sama_0728at 895.966 kb on + strand, within Sama_0728at 895.966 kb on + strand, within Sama_0728at 895.993 kb on - strand, within Sama_0728at 896.039 kb on + strand, within Sama_0728at 896.040 kb on - strand, within Sama_0728at 896.070 kb on + strand, within Sama_0728at 896.070 kb on + strand, within Sama_0728at 896.070 kb on + strand, within Sama_0728at 896.071 kb on - strand, within Sama_0728at 896.071 kb on - strand, within Sama_0728at 896.071 kb on - strand, within Sama_0728at 896.071 kb on - strand, within Sama_0728at 896.071 kb on - strand, within Sama_0728at 896.071 kb on - strand, within Sama_0728at 896.071 kb on - strand, within Sama_0728at 896.071 kb on - strand, within Sama_0728at 896.071 kb on - strand, within Sama_0728at 896.071 kb on - strand, within Sama_0728at 896.071 kb on - strand, within Sama_0728at 896.089 kb on + strandat 896.089 kb on + strandat 896.089 kb on + strandat 896.089 kb on + strandat 896.090 kb on - strandat 896.090 kb on - strandat 896.158 kb on - strandat 896.214 kb on + strandat 896.214 kb on + strandat 896.241 kb on - strandat 896.241 kb on - strandat 896.264 kb on + strandat 896.264 kb on + strandat 896.264 kb on + strandat 896.264 kb on + strandat 896.264 kb on + strandat 896.265 kb on - strandat 896.265 kb on - strandat 896.338 kb on + strandat 896.339 kb on - strandat 896.339 kb on - strandat 896.471 kb on - strandat 896.547 kb on + strandat 896.547 kb on + strandat 896.548 kb on - strandat 896.554 kb on + strandat 896.555 kb on - strandat 896.567 kb on - strandat 896.581 kb on + strandat 896.623 kb on - strandat 896.623 kb on - strandat 896.641 kb on - strandat 896.642 kb on + strandat 896.643 kb on - strandat 896.643 kb on - strandat 896.742 kb on - strandat 896.742 kb on - strandat 896.774 kb on + strandat 896.774 kb on + strandat 896.774 kb on + strandat 896.783 kb on + strandat 896.831 kb on + strandat 896.831 kb on + strandat 896.832 kb on - strandat 896.845 kb on + strandat 896.857 kb on + strand, within Sama_0729at 896.857 kb on + strand, within Sama_0729at 896.857 kb on + strand, within Sama_0729at 896.858 kb on - strand, within Sama_0729at 896.980 kb on - strand, within Sama_0729at 896.987 kb on + strand, within Sama_0729at 896.987 kb on + strand, within Sama_0729at 896.987 kb on + strand, within Sama_0729at 896.987 kb on + strand, within Sama_0729at 896.987 kb on + strand, within Sama_0729at 896.988 kb on - strand, within Sama_0729at 896.988 kb on - strand, within Sama_0729at 896.988 kb on - strand, within Sama_0729at 896.988 kb on - strand, within Sama_0729at 896.988 kb on - strand, within Sama_0729at 897.066 kb on + strand, within Sama_0729at 897.184 kb on - strand, within Sama_0729at 897.292 kb on + strand, within Sama_0729at 897.293 kb on - strand, within Sama_0729at 897.299 kb on + strand, within Sama_0729at 897.417 kb on + strand, within Sama_0729at 897.417 kb on + strand, within Sama_0729at 897.417 kb on + strand, within Sama_0729at 897.418 kb on - strand, within Sama_0729at 897.421 kb on + strand, within Sama_0729at 897.421 kb on + strand, within Sama_0729at 897.421 kb on + strand, within Sama_0729at 897.421 kb on + strand, within Sama_0729at 897.421 kb on + strand, within Sama_0729at 897.422 kb on - strand, within Sama_0729at 897.422 kb on - strand, within Sama_0729at 897.422 kb on - strand, within Sama_0729at 897.422 kb on - strand, within Sama_0729at 897.422 kb on - strand, within Sama_0729at 897.427 kb on + strand, within Sama_0729at 897.428 kb on - strand, within Sama_0729at 897.471 kb on + strand, within Sama_0729at 897.471 kb on + strand, within Sama_0729at 897.471 kb on + strand, within Sama_0729at 897.536 kb on + strand, within Sama_0729at 897.536 kb on + strand, within Sama_0729at 897.537 kb on - strand, within Sama_0729at 897.537 kb on - strand, within Sama_0729at 897.537 kb on - strand, within Sama_0729at 897.602 kb on + strand, within Sama_0729at 897.602 kb on + strand, within Sama_0729at 897.602 kb on + strand, within Sama_0729at 897.602 kb on + strand, within Sama_0729at 897.602 kb on + strand, within Sama_0729at 897.606 kb on + strand, within Sama_0729at 897.607 kb on - strand, within Sama_0729at 897.607 kb on - strand, within Sama_0729at 897.714 kb on + strand, within Sama_0729at 897.763 kb on + strand, within Sama_0729at 897.794 kb on + strand, within Sama_0729at 897.794 kb on + strand, within Sama_0729at 897.800 kb on + strand, within Sama_0729at 897.800 kb on + strand, within Sama_0729at 897.816 kb on + strand, within Sama_0729at 897.816 kb on + strand, within Sama_0729at 897.817 kb on - strand, within Sama_0729at 897.817 kb on - strand, within Sama_0729at 897.946 kb on - strand, within Sama_0729at 897.981 kb on + strand, within Sama_0729at 898.023 kb on + strand, within Sama_0729at 898.023 kb on + strand, within Sama_0729at 898.023 kb on + strand, within Sama_0729at 898.023 kb on + strand, within Sama_0729at 898.024 kb on - strand, within Sama_0729at 898.048 kb on - strand, within Sama_0729at 898.170 kb on + strand, within Sama_0729at 898.170 kb on + strand, within Sama_0729at 898.170 kb on + strand, within Sama_0729at 898.170 kb on + strand, within Sama_0729at 898.170 kb on + strand, within Sama_0729at 898.171 kb on - strand, within Sama_0729at 898.171 kb on - strand, within Sama_0729at 898.179 kb on + strand, within Sama_0729at 898.180 kb on - strand, within Sama_0729at 898.180 kb on - strand, within Sama_0729at 898.187 kb on + strand, within Sama_0729at 898.213 kb on + strand, within Sama_0729at 898.213 kb on + strand, within Sama_0729at 898.338 kb on + strandat 898.338 kb on + strandat 898.339 kb on - strandat 898.339 kb on - strandat 898.402 kb on - strandat 898.406 kb on - strandat 898.427 kb on + strandat 898.427 kb on + strandat 898.428 kb on - strandat 898.428 kb on - strandat 898.434 kb on - strandat 899.391 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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895,719 - Sama_0728 0.74 -0.5
895,779 + Sama_0728 0.77 +0.8
895,780 - Sama_0728 0.77 -1.8
895,780 - Sama_0728 0.77 +1.5
895,830 + Sama_0728 0.79 +0.5
895,830 + Sama_0728 0.79 -0.7
895,830 + Sama_0728 0.79 +0.8
895,830 + Sama_0728 0.79 +0.5
895,830 + Sama_0728 0.79 +0.0
895,830 + Sama_0728 0.79 +0.9
895,830 + Sama_0728 0.79 +0.6
895,831 - Sama_0728 0.79 +0.3
895,831 - Sama_0728 0.79 +0.1
895,831 - Sama_0728 0.79 -0.3
895,831 - Sama_0728 0.79 -0.2
895,831 - Sama_0728 0.79 +0.2
895,831 - Sama_0728 0.79 +0.5
895,831 - Sama_0728 0.79 -0.0
895,831 - Sama_0728 0.79 +2.0
895,852 + Sama_0728 0.80 +0.2
895,852 + Sama_0728 0.80 +0.0
895,903 + Sama_0728 0.82 -0.8
895,904 - Sama_0728 0.82 +0.3
895,924 + Sama_0728 0.83 -0.6
895,924 + Sama_0728 0.83 +0.4
895,924 + Sama_0728 0.83 -0.2
895,925 - Sama_0728 0.83 -0.5
895,925 - Sama_0728 0.83 -0.6
895,966 + Sama_0728 0.85 -1.3
895,966 + Sama_0728 0.85 +0.4
895,966 + Sama_0728 0.85 +0.8
895,993 - Sama_0728 0.86 -1.3
896,039 + Sama_0728 0.88 -0.2
896,040 - Sama_0728 0.88 -2.3
896,070 + Sama_0728 0.90 +0.8
896,070 + Sama_0728 0.90 +0.0
896,070 + Sama_0728 0.90 +0.2
896,071 - Sama_0728 0.90 -0.2
896,071 - Sama_0728 0.90 -0.4
896,071 - Sama_0728 0.90 -0.1
896,071 - Sama_0728 0.90 -0.9
896,071 - Sama_0728 0.90 -0.2
896,071 - Sama_0728 0.90 -0.8
896,071 - Sama_0728 0.90 -0.1
896,071 - Sama_0728 0.90 +2.1
896,071 - Sama_0728 0.90 +0.8
896,071 - Sama_0728 0.90 +0.3
896,071 - Sama_0728 0.90 +0.0
896,089 + -0.2
896,089 + +1.1
896,089 + +0.4
896,089 + -0.7
896,090 - +0.2
896,090 - +1.3
896,158 - -0.3
896,214 + +0.0
896,214 + +1.5
896,241 - -0.6
896,241 - -0.1
896,264 + +0.2
896,264 + -0.9
896,264 + -0.1
896,264 + +0.3
896,264 + +0.7
896,265 - +0.6
896,265 - -0.7
896,338 + +1.1
896,339 - -0.9
896,339 - +0.0
896,471 - +0.0
896,547 + -1.3
896,547 + -0.4
896,548 - +1.7
896,554 + +0.6
896,555 - +0.7
896,567 - +0.6
896,581 + +0.1
896,623 - -0.9
896,623 - -0.3
896,641 - -0.3
896,642 + +1.1
896,643 - +0.5
896,643 - +0.5
896,742 - -2.3
896,742 - +0.1
896,774 + -0.5
896,774 + +0.1
896,774 + -0.6
896,783 + -0.7
896,831 + -0.3
896,831 + -1.2
896,832 - +0.0
896,845 + -1.6
896,857 + Sama_0729 0.11 +0.5
896,857 + Sama_0729 0.11 +0.5
896,857 + Sama_0729 0.11 -0.2
896,858 - Sama_0729 0.11 -1.1
896,980 - Sama_0729 0.18 +0.0
896,987 + Sama_0729 0.18 -0.9
896,987 + Sama_0729 0.18 +0.4
896,987 + Sama_0729 0.18 -0.3
896,987 + Sama_0729 0.18 +0.3
896,987 + Sama_0729 0.18 -0.7
896,988 - Sama_0729 0.18 -0.7
896,988 - Sama_0729 0.18 +1.0
896,988 - Sama_0729 0.18 -0.1
896,988 - Sama_0729 0.18 -0.2
896,988 - Sama_0729 0.18 +0.5
897,066 + Sama_0729 0.23 -1.3
897,184 - Sama_0729 0.30 -1.8
897,292 + Sama_0729 0.36 -0.2
897,293 - Sama_0729 0.36 -0.2
897,299 + Sama_0729 0.36 -2.3
897,417 + Sama_0729 0.43 -0.3
897,417 + Sama_0729 0.43 -0.1
897,417 + Sama_0729 0.43 +0.3
897,418 - Sama_0729 0.43 -0.9
897,421 + Sama_0729 0.43 -1.3
897,421 + Sama_0729 0.43 +0.7
897,421 + Sama_0729 0.43 -1.0
897,421 + Sama_0729 0.43 -0.8
897,421 + Sama_0729 0.43 -0.9
897,422 - Sama_0729 0.44 -0.5
897,422 - Sama_0729 0.44 +0.0
897,422 - Sama_0729 0.44 -0.1
897,422 - Sama_0729 0.44 -0.6
897,422 - Sama_0729 0.44 -1.3
897,427 + Sama_0729 0.44 -0.4
897,428 - Sama_0729 0.44 -0.9
897,471 + Sama_0729 0.46 -0.7
897,471 + Sama_0729 0.46 -2.0
897,471 + Sama_0729 0.46 -1.0
897,536 + Sama_0729 0.50 +0.3
897,536 + Sama_0729 0.50 -0.1
897,537 - Sama_0729 0.50 +0.3
897,537 - Sama_0729 0.50 +0.5
897,537 - Sama_0729 0.50 -1.3
897,602 + Sama_0729 0.54 +0.8
897,602 + Sama_0729 0.54 -1.7
897,602 + Sama_0729 0.54 +0.3
897,602 + Sama_0729 0.54 -1.7
897,602 + Sama_0729 0.54 +2.8
897,606 + Sama_0729 0.54 -1.3
897,607 - Sama_0729 0.54 +1.2
897,607 - Sama_0729 0.54 +0.2
897,714 + Sama_0729 0.61 -0.7
897,763 + Sama_0729 0.63 +0.4
897,794 + Sama_0729 0.65 -1.2
897,794 + Sama_0729 0.65 -1.7
897,800 + Sama_0729 0.66 -1.1
897,800 + Sama_0729 0.66 -0.3
897,816 + Sama_0729 0.66 -0.4
897,816 + Sama_0729 0.66 -0.3
897,817 - Sama_0729 0.66 +3.9
897,817 - Sama_0729 0.66 -1.6
897,946 - Sama_0729 0.74 -0.5
897,981 + Sama_0729 0.76 -1.1
898,023 + Sama_0729 0.78 -0.1
898,023 + Sama_0729 0.78 -0.9
898,023 + Sama_0729 0.78 -1.6
898,023 + Sama_0729 0.78 -0.7
898,024 - Sama_0729 0.79 -1.9
898,048 - Sama_0729 0.80 -0.4
898,170 + Sama_0729 0.87 +0.4
898,170 + Sama_0729 0.87 -0.2
898,170 + Sama_0729 0.87 +2.1
898,170 + Sama_0729 0.87 -1.5
898,170 + Sama_0729 0.87 -1.2
898,171 - Sama_0729 0.87 +0.2
898,171 - Sama_0729 0.87 +0.3
898,179 + Sama_0729 0.88 -1.6
898,180 - Sama_0729 0.88 -0.7
898,180 - Sama_0729 0.88 -0.3
898,187 + Sama_0729 0.88 -1.3
898,213 + Sama_0729 0.90 -0.7
898,213 + Sama_0729 0.90 -1.0
898,338 + -0.3
898,338 + -0.0
898,339 - -1.3
898,339 - -2.4
898,402 - -0.6
898,406 - -1.2
898,427 + -0.4
898,427 + -0.2
898,428 - -1.5
898,428 - +2.5
898,434 - +0.0
899,391 - -0.1

Or see this region's nucleotide sequence