Strain Fitness in Shewanella amazonensis SB2B around Sama_0655

Experiment: Glycine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glycine (N)
810,184	+		Sama_0654	0.33	-0.6
810,184	+		Sama_0654	0.33	+0.2
810,185	-		Sama_0654	0.33	-1.7
810,185	-		Sama_0654	0.33	+0.5
810,211	+		Sama_0654	0.35	-0.3
810,238	+		Sama_0654	0.37	-0.3
810,239	-		Sama_0654	0.37	-0.1
810,348	+		Sama_0654	0.46	+0.7
810,348	+		Sama_0654	0.46	-0.5
810,348	+		Sama_0654	0.46	+0.0
810,348	+		Sama_0654	0.46	-0.3
810,349	-		Sama_0654	0.46	-1.0
810,349	-		Sama_0654	0.46	+1.4
810,349	+		Sama_0654	0.46	-1.1
810,349	-		Sama_0654	0.46	-0.9
810,349	-		Sama_0654	0.46	-0.9
810,349	-		Sama_0654	0.46	+0.6
810,350	+		Sama_0654	0.46	-0.2
810,350	+		Sama_0654	0.46	-0.1
810,350	+		Sama_0654	0.46	-1.4
810,350	+		Sama_0654	0.46	-1.3
810,350	+		Sama_0654	0.46	-0.4
810,350	+		Sama_0654	0.46	+1.8
810,350	+		Sama_0654	0.46	+0.3
810,350	+		Sama_0654	0.46	+0.3
810,350	+		Sama_0654	0.46	-1.3
810,350	+		Sama_0654	0.46	-0.0
810,350	+		Sama_0654	0.46	+0.7
810,350	+		Sama_0654	0.46	-0.4
810,351	-		Sama_0654	0.46	-0.5
810,351	-		Sama_0654	0.46	-0.3
810,351	-		Sama_0654	0.46	-0.5
810,351	-		Sama_0654	0.46	+0.5
810,351	-		Sama_0654	0.46	-1.7
810,351	-		Sama_0654	0.46	+0.4
810,351	-		Sama_0654	0.46	-0.7
810,351	-		Sama_0654	0.46	-0.6
810,351	-		Sama_0654	0.46	+0.3
810,447	+		Sama_0654	0.53	-0.6
810,447	+		Sama_0654	0.53	+0.3
810,447	+		Sama_0654	0.53	-0.9
810,447	+		Sama_0654	0.53	-1.3
810,447	+		Sama_0654	0.53	-1.0
810,447	+		Sama_0654	0.53	+0.6
810,447	+		Sama_0654	0.53	-1.2
810,448	-		Sama_0654	0.53	-0.5
810,448	-		Sama_0654	0.53	-0.5
810,449	+		Sama_0654	0.53	-1.2
810,449	+		Sama_0654	0.53	+0.9
810,449	+		Sama_0654	0.53	-0.7
810,449	+		Sama_0654	0.53	-1.7
810,449	+		Sama_0654	0.53	-0.0
810,450	-		Sama_0654	0.53	+1.7
810,450	-		Sama_0654	0.53	+0.2
810,450	-		Sama_0654	0.53	+0.7
810,450	-		Sama_0654	0.53	+0.2
810,459	+		Sama_0654	0.54	-0.3
810,459	+		Sama_0654	0.54	-0.5
810,460	-		Sama_0654	0.54	+1.2
810,480	+		Sama_0654	0.56	+1.0
810,482	+		Sama_0654	0.56	+0.1
810,482	+		Sama_0654	0.56	-0.8
810,482	+		Sama_0654	0.56	-1.5
810,561	+		Sama_0654	0.62	-1.3
810,561	+		Sama_0654	0.62	-0.2
810,561	+		Sama_0654	0.62	+0.1
810,562	-		Sama_0654	0.62	-1.4
810,562	-		Sama_0654	0.62	+0.1
810,562	-		Sama_0654	0.62	+0.3
810,562	-		Sama_0654	0.62	+0.2
810,566	+		Sama_0654	0.62	-1.5
810,566	+		Sama_0654	0.62	+0.0
810,567	-		Sama_0654	0.62	-1.4
810,567	-		Sama_0654	0.62	-0.3
810,567	-		Sama_0654	0.62	-1.2
810,613	+		Sama_0654	0.66	+0.7
810,613	+		Sama_0654	0.66	-0.3
810,613	+		Sama_0654	0.66	-0.7
810,613	+		Sama_0654	0.66	+0.4
810,614	-		Sama_0654	0.66	-0.7
810,614	-		Sama_0654	0.66	-2.0
810,614	-		Sama_0654	0.66	+1.3
810,706	+		Sama_0654	0.73	-1.0
810,713	+		Sama_0654	0.73	-1.7
810,735	-		Sama_0654	0.75	-0.3
810,735	-		Sama_0654	0.75	-0.3
810,924	-		Sama_0654	0.89	-0.9
810,991	+				+0.0
810,991	+				+0.6
810,991	+				+0.1
810,991	+				-1.0
810,991	+				+0.3
810,991	+				+0.0
810,992	-				+0.7
810,992	-				+0.3
810,992	-				+0.2
810,992	-				-0.5
811,043	+				-0.7
811,044	-				-0.5
811,048	+				-0.9
811,049	-				-1.4
811,049	-				+0.6
811,049	-				-0.6
811,058	+				-0.7
811,059	-				-1.2
811,059	-				-0.1
811,062	+				-1.4
811,063	-				-2.1
811,063	-				-0.3
811,063	-				+0.2
811,079	+				+0.7
811,079	+				-0.8
811,079	+				+0.2
811,079	+				+0.3
811,079	+				-1.0
811,080	-				+0.5
811,090	+				+0.0
811,090	+				-1.5
811,147	+				-2.1
811,148	-				+0.0
811,148	-				+1.3
811,155	+				+1.3
811,156	-				+0.8
811,202	+				+0.3
811,203	-				-0.1
811,203	-				+1.1
811,325	+		Sama_0655	0.14	-0.8
811,378	+		Sama_0655	0.18	+0.7
811,378	+		Sama_0655	0.18	-0.3
811,378	+		Sama_0655	0.18	-0.3
811,378	+		Sama_0655	0.18	-0.3
811,378	+		Sama_0655	0.18	-1.0
811,407	-		Sama_0655	0.21	+0.0
811,407	-		Sama_0655	0.21	+0.4
811,443	+		Sama_0655	0.24	-1.2
811,443	+		Sama_0655	0.24	+0.6
811,443	+		Sama_0655	0.24	-0.6
811,443	+		Sama_0655	0.24	-1.7
811,444	-		Sama_0655	0.24	-0.8
811,444	-		Sama_0655	0.24	+2.7
811,444	-		Sama_0655	0.24	-0.4
811,458	+		Sama_0655	0.25	-0.2
811,459	-		Sama_0655	0.25	+0.7
811,500	-		Sama_0655	0.28	-1.3
811,545	+		Sama_0655	0.32	-0.0
811,546	-		Sama_0655	0.32	-0.3
811,546	-		Sama_0655	0.32	-0.7
811,546	-		Sama_0655	0.32	+0.7
811,582	-		Sama_0655	0.35	-1.1
811,582	-		Sama_0655	0.35	+0.7
811,582	-		Sama_0655	0.35	-0.6
811,761	+		Sama_0655	0.49	+0.0
811,762	-		Sama_0655	0.49	-1.2
811,762	-		Sama_0655	0.49	-0.3
811,801	+		Sama_0655	0.52	-1.3
811,801	+		Sama_0655	0.52	-0.9
811,802	-		Sama_0655	0.52	+0.4
811,802	-		Sama_0655	0.52	+0.4
811,802	-		Sama_0655	0.52	-0.9
811,809	-		Sama_0655	0.53	-0.4
811,844	-		Sama_0655	0.56	-0.5
811,844	-		Sama_0655	0.56	+0.2
811,844	-		Sama_0655	0.56	+0.4
811,869	+		Sama_0655	0.58	-1.5
811,947	-		Sama_0655	0.64	-1.1
812,052	+		Sama_0655	0.72	-0.3
812,052	+		Sama_0655	0.72	+0.3
812,052	+		Sama_0655	0.72	-0.7
812,052	+		Sama_0655	0.72	+1.4
812,053	-		Sama_0655	0.72	-0.2
812,053	-		Sama_0655	0.72	+0.5
812,053	-		Sama_0655	0.72	-0.7
812,053	-		Sama_0655	0.72	-0.8
812,053	-		Sama_0655	0.72	-0.5
812,053	-		Sama_0655	0.72	+0.4
812,075	+		Sama_0655	0.74	+0.2
812,076	-		Sama_0655	0.74	-0.2
812,125	+		Sama_0655	0.78	+0.7
812,126	-		Sama_0655	0.78	+0.1
812,139	+		Sama_0655	0.79	+0.2
812,139	+		Sama_0655	0.79	-1.7
812,173	+		Sama_0655	0.82	+0.4
812,174	-		Sama_0655	0.82	-0.2
812,174	-		Sama_0655	0.82	-0.0
812,186	+		Sama_0655	0.83	+0.5
812,186	+		Sama_0655	0.83	-1.2
812,187	-		Sama_0655	0.83	-1.4
812,187	-		Sama_0655	0.83	+0.7
812,187	-		Sama_0655	0.83	-2.0
812,187	-		Sama_0655	0.83	-1.6
812,187	-		Sama_0655	0.83	-0.7
812,223	+		Sama_0655	0.86	+0.6
812,224	-		Sama_0655	0.86	-0.9
812,292	+				-0.5
812,292	+				-0.3
812,292	+				-0.0
812,293	-				+1.0
812,352	-				-1.5
812,371	-				-0.3
812,414	+				-0.1
812,414	+				+0.1
812,414	+				-2.2
812,414	+				+0.0
812,414	+				+0.7
812,414	+				+0.4
812,414	+				+2.2
812,415	-				-1.3
812,415	-				-1.4
812,415	-				+0.8
812,415	-				+1.0
812,415	-				-0.7
812,415	-				+0.5
812,415	-				+1.3
812,415	-				-2.1
812,415	-				+0.7
812,417	-				-0.2
812,477	-				+0.6
812,477	-				+1.6
812,477	-				-1.3
812,477	-				+1.6
812,477	-				-0.9
812,477	-				-0.8
812,615	+		Sama_0656	0.24	-0.5
812,627	+		Sama_0656	0.25	+0.0
812,627	+		Sama_0656	0.25	+0.2
812,627	+		Sama_0656	0.25	+0.4
812,627	+		Sama_0656	0.25	-0.3
812,628	-		Sama_0656	0.25	-2.8
812,628	-		Sama_0656	0.25	-1.1
812,628	-		Sama_0656	0.25	-0.4
812,628	-		Sama_0656	0.25	-0.4
812,628	-		Sama_0656	0.25	-0.5
812,628	-		Sama_0656	0.25	-1.1
812,713	-		Sama_0656	0.35	+1.1
812,713	-		Sama_0656	0.35	-0.3
812,735	+		Sama_0656	0.38	-0.3
812,735	+		Sama_0656	0.38	-0.6
812,735	+		Sama_0656	0.38	-1.8
812,735	+		Sama_0656	0.38	-1.1
812,735	-		Sama_0656	0.38	+0.7
812,735	+		Sama_0656	0.38	+1.3
812,735	+		Sama_0656	0.38	+1.1
812,735	+		Sama_0656	0.38	+1.0
812,735	+		Sama_0656	0.38	+2.0
812,736	-		Sama_0656	0.38	+3.0
812,736	-		Sama_0656	0.38	+0.6
812,736	-		Sama_0656	0.38	+0.3
812,736	-		Sama_0656	0.38	-0.1
812,736	-		Sama_0656	0.38	-0.3
812,736	-		Sama_0656	0.38	-0.4
812,738	+		Sama_0656	0.38	-0.2
812,739	-		Sama_0656	0.38	+0.8
812,820	+		Sama_0656	0.47	-0.3
812,820	+		Sama_0656	0.47	+0.3
812,820	+		Sama_0656	0.47	+0.2
812,851	-		Sama_0656	0.51	-0.8
812,876	-		Sama_0656	0.54	-1.4
812,876	-		Sama_0656	0.54	+0.3
812,876	-		Sama_0656	0.54	+0.0
812,899	+		Sama_0656	0.57	+0.6
812,900	-		Sama_0656	0.57	-0.0
812,900	-		Sama_0656	0.57	-0.8
813,010	-		Sama_0656	0.70	-0.5
813,010	-		Sama_0656	0.70	-0.5
813,010	-		Sama_0656	0.70	-0.8
813,060	+		Sama_0656	0.75	+0.3
813,060	+		Sama_0656	0.75	-1.0
813,060	+		Sama_0656	0.75	-0.3
813,060	+		Sama_0656	0.75	-0.9
813,060	+		Sama_0656	0.75	-0.7
813,060	+		Sama_0656	0.75	-2.2
813,060	+		Sama_0656	0.75	-0.5
813,060	+		Sama_0656	0.75	+1.7
813,060	+		Sama_0656	0.75	-0.9
813,060	+		Sama_0656	0.75	-0.3
813,060	+		Sama_0656	0.75	+0.5
813,060	+		Sama_0656	0.75	+0.9
813,060	+		Sama_0656	0.75	+1.3
813,060	+		Sama_0656	0.75	-0.5
813,060	+		Sama_0656	0.75	+0.4
813,060	+		Sama_0656	0.75	+0.3
813,060	+		Sama_0656	0.75	-1.0
813,060	+		Sama_0656	0.75	-1.8
813,060	+		Sama_0656	0.75	+0.6
813,060	+		Sama_0656	0.75	-0.8
813,061	-		Sama_0656	0.76	+0.1
813,061	-		Sama_0656	0.76	-1.0
813,061	-		Sama_0656	0.76	-0.1
813,061	-		Sama_0656	0.76	-2.1
813,061	-		Sama_0656	0.76	+1.3
813,061	-		Sama_0656	0.76	-0.4
813,061	-		Sama_0656	0.76	-0.5
813,061	-		Sama_0656	0.76	+1.1
813,061	-		Sama_0656	0.76	-0.6
813,061	-		Sama_0656	0.76	+0.8
813,061	-		Sama_0656	0.76	+0.5
813,061	-		Sama_0656	0.76	-0.5
813,061	-		Sama_0656	0.76	+1.6
813,061	-		Sama_0656	0.76	+0.8
813,061	-		Sama_0656	0.76	-0.0
813,061	-		Sama_0656	0.76	-0.4
813,061	-		Sama_0656	0.76	-0.4
813,061	-		Sama_0656	0.76	+0.1
813,061	-		Sama_0656	0.76	-0.3
813,061	-		Sama_0656	0.76	+0.6
813,061	-		Sama_0656	0.76	-0.2
813,061	-		Sama_0656	0.76	-0.3
813,062	+		Sama_0656	0.76	+0.0
813,062	+		Sama_0656	0.76	-0.8
813,062	+		Sama_0656	0.76	-0.4
813,062	+		Sama_0656	0.76	+0.0
813,062	+		Sama_0656	0.76	+0.2
813,062	+		Sama_0656	0.76	+0.4
813,062	+		Sama_0656	0.76	-1.9
813,062	+		Sama_0656	0.76	-1.0
813,062	+		Sama_0656	0.76	-0.4
813,062	+		Sama_0656	0.76	+0.6
813,062	+		Sama_0656	0.76	+0.1
813,062	+		Sama_0656	0.76	-0.4
813,062	+		Sama_0656	0.76	-0.4
813,062	+		Sama_0656	0.76	+0.4
813,062	+		Sama_0656	0.76	+0.3
813,062	+		Sama_0656	0.76	-0.1
813,062	+		Sama_0656	0.76	-1.2
813,062	+		Sama_0656	0.76	-0.8
813,063	-		Sama_0656	0.76	+0.7
813,063	-		Sama_0656	0.76	-0.2
813,063	-		Sama_0656	0.76	-0.2
813,063	-		Sama_0656	0.76	+0.4
813,063	-		Sama_0656	0.76	-0.0
813,063	-		Sama_0656	0.76	-0.4
813,063	-		Sama_0656	0.76	+0.2
813,063	-		Sama_0656	0.76	+0.4
813,063	-		Sama_0656	0.76	-1.0
813,063	-		Sama_0656	0.76	-1.7
813,063	-		Sama_0656	0.76	-1.6
813,092	+		Sama_0656	0.79	-0.4
813,092	+		Sama_0656	0.79	-0.8
813,092	+		Sama_0656	0.79	+0.7
813,092	+		Sama_0656	0.79	-0.0
813,093	-		Sama_0656	0.79	+0.4
813,093	-		Sama_0656	0.79	-0.4
813,093	-		Sama_0656	0.79	+1.3
813,093	-		Sama_0656	0.79	-1.6
813,093	-		Sama_0656	0.79	-0.9
813,149	+		Sama_0656	0.86	-0.2
813,156	+		Sama_0656	0.87	+0.7
813,189	+				+0.5
813,189	+				-0.1
813,190	-				-1.1
813,190	-				+0.5
813,190	-				+1.1
813,190	-				-0.7
813,190	-				-0.8
813,190	-				-0.1
813,190	-				-0.1
813,190	-				-0.7
813,197	-				-0.9
813,250	+				+0.5
813,250	+				-1.7
813,251	-				+1.2
813,283	+				-0.4
813,283	+				+0.1
813,283	+				-2.0
813,284	-				+0.2
813,284	-				+0.7
813,284	-				+0.4
813,284	-				-1.6
813,291	+				-0.3
813,291	+				-1.5
813,291	+				-1.2
813,291	+				-1.5
813,291	+				-1.1
813,291	+				+0.5
813,291	+				-0.5
813,291	+				-0.6
813,292	-				+0.8
813,292	-				-0.6
813,292	-				+2.0
813,292	-				+0.4
813,292	-				-0.6
813,292	-				-0.6
813,292	-				-0.9
813,292	-				-0.5
813,292	-				+0.5
813,292	-				-0.1
813,292	-				-0.6
813,292	-				+0.9
813,295	+				-0.7
813,295	+				+1.0
813,296	-				-0.5
813,296	-				+0.5
813,296	-				+0.3
813,296	-				+0.7
813,297	+				-1.2
813,317	+				-0.7
813,340	-				-0.2
813,340	-				-0.6
813,344	+				-0.7
813,376	+				+1.4
813,383	+				-0.4
813,383	+				+1.1
813,384	-				-0.3
813,391	+				+1.0