Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2504

Experiment: L-Malic (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Malic (C)
2,667,973	-		Dshi_2503	0.90	-1.1
2,667,993	+				-1.1
2,668,000	-				-0.7
2,668,012	-				-0.2
2,668,066	-				-0.4
2,668,082	+				+0.3
2,668,095	-				+1.5
2,668,105	+				-0.0
2,668,193	+				+0.3
2,668,198	+				-1.0
2,668,204	-				-0.3
2,668,209	+				-0.8
2,668,209	+				-0.7
2,668,218	-				-0.4
2,668,229	-				-0.2
2,668,278	-				-0.7
2,668,285	-				+0.7
2,668,304	-				-0.0
2,668,331	+				-0.0
2,668,367	+				-0.6
2,668,437	+				+0.9
2,668,445	+				-0.4
2,668,446	-				-0.1
2,668,544	+				+0.6
2,668,544	+				-0.3
2,668,559	+				-0.7
2,668,563	+				+0.8
2,668,568	+				-0.9
2,668,576	-				+0.6
2,668,584	-				-0.1
2,668,611	+				+0.6
2,668,621	-				-0.5
2,668,630	-				+0.7
2,668,632	+				+0.3
2,668,632	+				+0.9
2,668,635	+				-0.2
2,668,637	+				-0.1
2,668,637	+				-0.6
2,668,637	+				+2.1
2,668,637	+				-0.1
2,668,640	-				-0.2
2,668,642	+				-0.6
2,668,652	-				+0.2
2,668,652	-				+0.3
2,668,670	+				+0.8
2,668,670	+				+0.0
2,668,678	-				+0.2
2,668,678	-				+0.3
2,668,678	-				-0.4
2,668,750	+				+0.4
2,668,772	-				-0.8
2,668,772	-				+0.0
2,668,779	+				+0.0
2,668,779	+				+1.5
2,668,779	+				+1.2
2,668,779	+				+0.6
2,668,779	+				-0.4
2,668,779	+				-0.0
2,668,779	+				+0.1
2,668,787	-				-0.2
2,668,788	-				-0.6
2,668,788	-				-0.1
2,668,788	-				+0.5
2,668,788	-				-0.4
2,668,788	-				-0.1
2,668,788	-				-0.9
2,668,788	-				-0.2
2,668,825	-				-0.6
2,668,834	+				+0.1
2,668,842	-				-0.4
2,668,842	-				-0.2
2,668,842	-				-0.1
2,668,848	-				-0.2
2,668,874	+				+1.1
2,668,877	-				-0.1
2,668,879	+				-1.7
2,668,883	+				+0.6
2,668,883	+				+0.1
2,668,884	+				+0.2
2,668,887	-				+0.6
2,668,888	+				-1.1
2,668,890	+				-0.1
2,668,891	-				+0.5
2,668,893	+				-0.9
2,668,898	-				+0.6
2,668,898	-				+0.4
2,668,901	-				-0.9
2,669,014	-				+0.5
2,669,014	-				-0.3
2,669,014	-				+0.8
2,669,037	-		Dshi_2504	0.11	-0.8
2,669,054	-		Dshi_2504	0.12	-0.1
2,669,142	+		Dshi_2504	0.19	+0.3
2,669,179	-		Dshi_2504	0.21	+0.2
2,669,207	+		Dshi_2504	0.24	+0.2
2,669,215	-		Dshi_2504	0.24	-0.6
2,669,215	-		Dshi_2504	0.24	+0.3
2,669,215	-		Dshi_2504	0.24	-0.2
2,669,216	-		Dshi_2504	0.24	-0.2
2,669,234	+		Dshi_2504	0.26	-0.3
2,669,251	+		Dshi_2504	0.27	+0.3
2,669,251	+		Dshi_2504	0.27	-0.0
2,669,259	-		Dshi_2504	0.27	+0.5
2,669,259	-		Dshi_2504	0.27	-0.7
2,669,259	-		Dshi_2504	0.27	-0.3
2,669,259	-		Dshi_2504	0.27	+0.1
2,669,259	-		Dshi_2504	0.27	-0.3
2,669,301	+		Dshi_2504	0.31	+0.3
2,669,309	-		Dshi_2504	0.31	-0.3
2,669,360	+		Dshi_2504	0.35	+0.9
2,669,361	+		Dshi_2504	0.35	+0.6
2,669,361	+		Dshi_2504	0.35	-1.0
2,669,368	-		Dshi_2504	0.35	-0.5
2,669,388	+		Dshi_2504	0.37	+0.1
2,669,461	+		Dshi_2504	0.42	+0.2
2,669,469	-		Dshi_2504	0.43	+0.5
2,669,479	-		Dshi_2504	0.44	+0.1
2,669,507	+		Dshi_2504	0.46	+0.5
2,669,679	+		Dshi_2504	0.59	+0.9
2,669,687	-		Dshi_2504	0.59	+0.4
2,669,722	-		Dshi_2504	0.62	+0.6
2,669,724	+		Dshi_2504	0.62	-0.6
2,669,757	-		Dshi_2504	0.64	-0.0
2,669,810	-		Dshi_2504	0.68	-0.5
2,669,817	+		Dshi_2504	0.69	-0.4
2,669,819	+		Dshi_2504	0.69	-0.2
2,669,827	-		Dshi_2504	0.70	+0.7
2,669,849	-		Dshi_2504	0.71	+0.8
2,669,853	-		Dshi_2504	0.72	-1.0
2,669,897	+		Dshi_2504	0.75	-0.3
2,669,913	-		Dshi_2504	0.76	+0.5
2,669,919	+		Dshi_2504	0.76	-0.3
2,669,945	+		Dshi_2504	0.78	+0.8
2,669,957	+		Dshi_2504	0.79	-0.2
2,669,959	-		Dshi_2504	0.79	+0.3
2,670,009	+		Dshi_2504	0.83	+0.7
2,670,009	+		Dshi_2504	0.83	-0.0
2,670,009	+		Dshi_2504	0.83	+0.0
2,670,010	+		Dshi_2504	0.83	-0.4
2,670,017	-		Dshi_2504	0.84	+0.2
2,670,017	-		Dshi_2504	0.84	+0.1
2,670,018	-		Dshi_2504	0.84	+0.4
2,670,018	-		Dshi_2504	0.84	+0.5
2,670,084	+		Dshi_2504	0.89	+0.1
2,670,107	+				+1.0
2,670,116	-				+0.5
2,670,132	+				-0.2
2,670,157	+				+0.1
2,670,201	+				+0.1
2,670,221	+				+0.1
2,670,228	+				+0.6
2,670,388	+		Dshi_2505	0.15	-0.7
2,670,411	-		Dshi_2505	0.20	-1.0
2,670,437	+		Dshi_2505	0.26	+0.7
2,670,479	-		Dshi_2505	0.34	-0.6
2,670,479	-		Dshi_2505	0.34	-0.5
2,670,518	+		Dshi_2505	0.42	+0.2
2,670,518	+		Dshi_2505	0.42	-0.0
2,670,520	+		Dshi_2505	0.43	+0.4
2,670,537	-		Dshi_2505	0.46	-0.5
2,670,558	+		Dshi_2505	0.50	+1.5
2,670,625	+		Dshi_2505	0.64	+0.6
2,670,647	-		Dshi_2505	0.69	+0.1
2,670,673	-		Dshi_2505	0.74	-0.2
2,670,688	-		Dshi_2505	0.77	-0.0
2,670,713	-		Dshi_2505	0.82	-0.4
2,670,769	-				-0.1
2,670,805	-				-0.7
2,670,818	-				-0.3
2,670,849	-		Dshi_2506	0.13	+0.2
2,670,904	+		Dshi_2506	0.26	+0.2
2,670,908	-		Dshi_2506	0.27	-0.2
2,671,010	+		Dshi_2506	0.52	-0.6
2,671,010	+		Dshi_2506	0.52	-0.6
2,671,059	+		Dshi_2506	0.63	+0.7
2,671,111	+		Dshi_2506	0.76	+0.0
2,671,111	-		Dshi_2506	0.76	+0.2
2,671,121	+		Dshi_2506	0.78	-0.3
2,671,121	+		Dshi_2506	0.78	+0.0
2,671,121	+		Dshi_2506	0.78	-0.0
2,671,121	+		Dshi_2506	0.78	-0.8
2,671,121	+		Dshi_2506	0.78	+0.4
2,671,129	-		Dshi_2506	0.80	-0.5
2,671,136	+		Dshi_2506	0.82	+0.6
2,671,171	-				-1.7
2,671,220	+				+0.2
2,671,226	-				+1.5
2,671,228	+				+0.2