Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0951 and Dshi_0952 are separated by 493 nucleotides Dshi_0952 and Dshi_0953 are separated by 35 nucleotides
Dshi_0951: Dshi_0951 - hypothetical protein (RefSeq), at 975,412 to 975,882
_0951
Dshi_0952: Dshi_0952 - tryptophan synthase, alpha subunit (RefSeq), at 976,376 to 977,194
_0952
Dshi_0953: Dshi_0953 - MATE efflux family protein (RefSeq), at 977,230 to 978,582
_0953
Position (kb) 976
977
978 Strain fitness (log2 ratio) -2
-1
0
1 at 976.340 kb on - strand at 977.319 kb on - strand at 977.350 kb on - strand at 977.424 kb on + strand, within Dshi_0953 at 977.454 kb on + strand, within Dshi_0953 at 977.460 kb on + strand, within Dshi_0953 at 977.490 kb on + strand, within Dshi_0953 at 977.497 kb on + strand, within Dshi_0953 at 977.512 kb on - strand, within Dshi_0953 at 977.522 kb on - strand, within Dshi_0953 at 977.543 kb on - strand, within Dshi_0953 at 977.660 kb on - strand, within Dshi_0953 at 977.760 kb on + strand, within Dshi_0953 at 977.783 kb on - strand, within Dshi_0953 at 977.788 kb on - strand, within Dshi_0953 at 977.791 kb on + strand, within Dshi_0953 at 977.822 kb on - strand, within Dshi_0953 at 977.832 kb on - strand, within Dshi_0953 at 977.955 kb on + strand, within Dshi_0953 at 977.994 kb on - strand, within Dshi_0953 at 978.006 kb on + strand, within Dshi_0953 at 978.020 kb on + strand, within Dshi_0953 at 978.057 kb on - strand, within Dshi_0953 at 978.080 kb on + strand, within Dshi_0953
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 976,340 - +0.1 977,319 - +0.7 977,350 - +0.4 977,424 + Dshi_0953 0.14 +0.9 977,454 + Dshi_0953 0.17 +0.1 977,460 + Dshi_0953 0.17 +1.7 977,490 + Dshi_0953 0.19 -0.2 977,497 + Dshi_0953 0.20 +0.1 977,512 - Dshi_0953 0.21 -0.2 977,522 - Dshi_0953 0.22 -0.1 977,543 - Dshi_0953 0.23 -0.1 977,660 - Dshi_0953 0.32 +0.3 977,760 + Dshi_0953 0.39 +0.4 977,783 - Dshi_0953 0.41 -0.0 977,788 - Dshi_0953 0.41 -0.3 977,791 + Dshi_0953 0.41 +0.7 977,822 - Dshi_0953 0.44 +0.5 977,832 - Dshi_0953 0.44 +0.7 977,955 + Dshi_0953 0.54 -1.0 977,994 - Dshi_0953 0.56 -0.6 978,006 + Dshi_0953 0.57 +0.1 978,020 + Dshi_0953 0.58 +0.0 978,057 - Dshi_0953 0.61 -2.3 978,080 + Dshi_0953 0.63 +1.5
Or see this region's nucleotide sequence