Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0423

Experiment: L-Malic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0421 and Dshi_0422 are separated by 184 nucleotidesDshi_0422 and Dshi_0423 are separated by 77 nucleotidesDshi_0423 and Dshi_0424 are separated by 616 nucleotides Dshi_0421: Dshi_0421 - phospholipase D/Transphosphatidylase (RefSeq), at 413,435 to 414,979 _0421 Dshi_0422: Dshi_0422 - Propeptide PepSY amd peptidase M4 (RefSeq), at 415,164 to 415,685 _0422 Dshi_0423: Dshi_0423 - phosphoesterase PA-phosphatase related (RefSeq), at 415,763 to 416,488 _0423 Dshi_0424: Dshi_0424 - peptidase M41 (RefSeq), at 417,105 to 417,566 _0424 Position (kb) 415 416 417Strain fitness (log2 ratio) -1 0 1at 414.766 kb on + strand, within Dshi_0421at 414.799 kb on + strand, within Dshi_0421at 414.802 kb on - strand, within Dshi_0421at 414.813 kb on + strand, within Dshi_0421at 414.925 kb on - strandat 414.930 kb on - strandat 414.951 kb on + strandat 414.988 kb on + strandat 414.996 kb on - strandat 415.015 kb on - strandat 415.030 kb on - strandat 415.045 kb on + strandat 415.055 kb on + strandat 415.063 kb on - strandat 415.135 kb on + strandat 415.140 kb on + strandat 415.238 kb on - strand, within Dshi_0422at 415.298 kb on + strand, within Dshi_0422at 415.340 kb on - strand, within Dshi_0422at 415.346 kb on + strand, within Dshi_0422at 415.408 kb on + strand, within Dshi_0422at 415.408 kb on + strand, within Dshi_0422at 415.408 kb on + strand, within Dshi_0422at 415.408 kb on + strand, within Dshi_0422at 415.408 kb on + strand, within Dshi_0422at 415.408 kb on + strand, within Dshi_0422at 415.416 kb on - strand, within Dshi_0422at 415.416 kb on - strand, within Dshi_0422at 415.416 kb on - strand, within Dshi_0422at 415.416 kb on - strand, within Dshi_0422at 415.416 kb on - strand, within Dshi_0422at 415.418 kb on + strand, within Dshi_0422at 415.433 kb on - strand, within Dshi_0422at 415.439 kb on - strand, within Dshi_0422at 415.448 kb on + strand, within Dshi_0422at 415.453 kb on + strand, within Dshi_0422at 415.504 kb on + strand, within Dshi_0422at 415.516 kb on - strand, within Dshi_0422at 415.519 kb on + strand, within Dshi_0422at 415.538 kb on - strand, within Dshi_0422at 415.592 kb on + strand, within Dshi_0422at 415.646 kb on + strandat 415.747 kb on - strandat 415.759 kb on + strandat 415.759 kb on + strandat 415.759 kb on + strandat 415.759 kb on + strandat 415.767 kb on - strandat 415.767 kb on - strandat 415.775 kb on - strandat 415.984 kb on - strand, within Dshi_0423at 415.984 kb on - strand, within Dshi_0423at 415.986 kb on - strand, within Dshi_0423at 416.006 kb on - strand, within Dshi_0423at 416.008 kb on + strand, within Dshi_0423at 416.015 kb on + strand, within Dshi_0423at 416.063 kb on + strand, within Dshi_0423at 416.063 kb on + strand, within Dshi_0423at 416.071 kb on - strand, within Dshi_0423at 416.071 kb on - strand, within Dshi_0423at 416.088 kb on + strand, within Dshi_0423at 416.088 kb on + strand, within Dshi_0423at 416.123 kb on - strand, within Dshi_0423at 416.219 kb on + strand, within Dshi_0423at 416.273 kb on - strand, within Dshi_0423at 416.297 kb on - strand, within Dshi_0423at 416.309 kb on + strand, within Dshi_0423at 416.317 kb on - strand, within Dshi_0423at 416.405 kb on - strand, within Dshi_0423at 416.425 kb on + strandat 416.427 kb on + strandat 416.433 kb on + strandat 416.505 kb on - strandat 416.512 kb on - strandat 416.530 kb on - strandat 416.557 kb on + strandat 416.562 kb on + strandat 416.565 kb on - strandat 416.629 kb on + strandat 416.631 kb on + strandat 416.668 kb on + strandat 416.675 kb on + strandat 416.676 kb on - strandat 416.701 kb on + strandat 416.785 kb on + strandat 416.786 kb on - strandat 416.832 kb on + strandat 416.843 kb on + strandat 416.851 kb on - strandat 416.853 kb on + strandat 416.853 kb on + strandat 416.853 kb on + strandat 416.861 kb on - strandat 416.861 kb on - strandat 416.861 kb on - strandat 416.880 kb on - strandat 416.882 kb on + strandat 416.922 kb on - strandat 417.005 kb on - strandat 417.012 kb on - strandat 417.014 kb on + strandat 417.027 kb on + strandat 417.037 kb on + strandat 417.045 kb on - strandat 417.045 kb on - strandat 417.052 kb on - strandat 417.059 kb on + strandat 417.128 kb on + strandat 417.183 kb on + strand, within Dshi_0424at 417.191 kb on - strand, within Dshi_0424at 417.197 kb on + strand, within Dshi_0424at 417.212 kb on + strand, within Dshi_0424at 417.237 kb on + strand, within Dshi_0424at 417.239 kb on + strand, within Dshi_0424at 417.251 kb on - strand, within Dshi_0424at 417.267 kb on + strand, within Dshi_0424at 417.313 kb on + strand, within Dshi_0424at 417.346 kb on - strand, within Dshi_0424at 417.348 kb on - strand, within Dshi_0424at 417.441 kb on + strand, within Dshi_0424at 417.441 kb on - strand, within Dshi_0424at 417.474 kb on + strand, within Dshi_0424at 417.480 kb on + strand, within Dshi_0424

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
remove
414,766 + Dshi_0421 0.86 -1.0
414,799 + Dshi_0421 0.88 -0.3
414,802 - Dshi_0421 0.88 +0.8
414,813 + Dshi_0421 0.89 -0.2
414,925 - -0.2
414,930 - +0.7
414,951 + +0.4
414,988 + +0.6
414,996 - +0.4
415,015 - -0.2
415,030 - +0.2
415,045 + -0.7
415,055 + -0.4
415,063 - +0.8
415,135 + -0.1
415,140 + +1.2
415,238 - Dshi_0422 0.14 +0.1
415,298 + Dshi_0422 0.26 +0.2
415,340 - Dshi_0422 0.34 +0.4
415,346 + Dshi_0422 0.35 +0.5
415,408 + Dshi_0422 0.47 -0.6
415,408 + Dshi_0422 0.47 +0.2
415,408 + Dshi_0422 0.47 -0.7
415,408 + Dshi_0422 0.47 -0.2
415,408 + Dshi_0422 0.47 +0.8
415,408 + Dshi_0422 0.47 -0.2
415,416 - Dshi_0422 0.48 +0.2
415,416 - Dshi_0422 0.48 +0.1
415,416 - Dshi_0422 0.48 -0.0
415,416 - Dshi_0422 0.48 +0.5
415,416 - Dshi_0422 0.48 -0.3
415,418 + Dshi_0422 0.49 +0.0
415,433 - Dshi_0422 0.52 +0.1
415,439 - Dshi_0422 0.53 +1.1
415,448 + Dshi_0422 0.54 +0.2
415,453 + Dshi_0422 0.55 -0.2
415,504 + Dshi_0422 0.65 +0.3
415,516 - Dshi_0422 0.67 -0.9
415,519 + Dshi_0422 0.68 +0.0
415,538 - Dshi_0422 0.72 +0.2
415,592 + Dshi_0422 0.82 +0.5
415,646 + +0.3
415,747 - -0.4
415,759 + -0.2
415,759 + +0.4
415,759 + +0.0
415,759 + +0.9
415,767 - +0.7
415,767 - -0.1
415,775 - -0.2
415,984 - Dshi_0423 0.30 -0.2
415,984 - Dshi_0423 0.30 -1.2
415,986 - Dshi_0423 0.31 -0.1
416,006 - Dshi_0423 0.33 -0.9
416,008 + Dshi_0423 0.34 -0.2
416,015 + Dshi_0423 0.35 +0.3
416,063 + Dshi_0423 0.41 -1.2
416,063 + Dshi_0423 0.41 -0.1
416,071 - Dshi_0423 0.42 +0.2
416,071 - Dshi_0423 0.42 +0.2
416,088 + Dshi_0423 0.45 -0.5
416,088 + Dshi_0423 0.45 -0.4
416,123 - Dshi_0423 0.50 -0.7
416,219 + Dshi_0423 0.63 +0.4
416,273 - Dshi_0423 0.70 -0.3
416,297 - Dshi_0423 0.74 -0.2
416,309 + Dshi_0423 0.75 -0.7
416,317 - Dshi_0423 0.76 +0.2
416,405 - Dshi_0423 0.88 -0.6
416,425 + -0.0
416,427 + +0.2
416,433 + -0.5
416,505 - -0.0
416,512 - -0.4
416,530 - -0.5
416,557 + +0.2
416,562 + -0.3
416,565 - +0.1
416,629 + -1.6
416,631 + -0.4
416,668 + +1.4
416,675 + +0.0
416,676 - +0.6
416,701 + +0.2
416,785 + -0.6
416,786 - -0.2
416,832 + +0.9
416,843 + +0.1
416,851 - -0.4
416,853 + +0.3
416,853 + +0.4
416,853 + -0.8
416,861 - +0.6
416,861 - +1.1
416,861 - +0.9
416,880 - +1.2
416,882 + +0.8
416,922 - +0.9
417,005 - -1.1
417,012 - +0.6
417,014 + -0.9
417,027 + +0.2
417,037 + +1.0
417,045 - +0.7
417,045 - +0.2
417,052 - -0.9
417,059 + -0.6
417,128 + +0.4
417,183 + Dshi_0424 0.17 +0.2
417,191 - Dshi_0424 0.19 +0.0
417,197 + Dshi_0424 0.20 +0.9
417,212 + Dshi_0424 0.23 -0.8
417,237 + Dshi_0424 0.29 +0.1
417,239 + Dshi_0424 0.29 -0.1
417,251 - Dshi_0424 0.32 -0.9
417,267 + Dshi_0424 0.35 -0.1
417,313 + Dshi_0424 0.45 -0.2
417,346 - Dshi_0424 0.52 +0.4
417,348 - Dshi_0424 0.53 +0.1
417,441 + Dshi_0424 0.73 -0.4
417,441 - Dshi_0424 0.73 +1.6
417,474 + Dshi_0424 0.80 -0.1
417,480 + Dshi_0424 0.81 -0.0

Or see this region's nucleotide sequence