Strain Fitness in Marinobacter adhaerens HP15 around HP15_877

Experiment: m.b. Furfuryl Alcohol 0.125 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_875 and HP15_876 are separated by 27 nucleotidesHP15_876 and HP15_877 overlap by 4 nucleotidesHP15_877 and HP15_878 are separated by 106 nucleotidesHP15_878 and HP15_879 are separated by 84 nucleotides HP15_875: HP15_875 - protein containing DUF159, at 893,270 to 893,983 _875 HP15_876: HP15_876 - class I peptide chain release factor, at 894,011 to 894,424 _876 HP15_877: HP15_877 - lipase/esterase, at 894,421 to 895,491 _877 HP15_878: HP15_878 - conserved hypothetical protein, at 895,598 to 895,924 _878 HP15_879: HP15_879 - short-chain dehydrogenase/reductase SDR, at 896,009 to 896,683 _879 Position (kb) 894 895 896Strain fitness (log2 ratio) -2 -1 0 1 2at 893.424 kb on - strand, within HP15_875at 893.465 kb on + strand, within HP15_875at 893.471 kb on - strand, within HP15_875at 893.540 kb on - strand, within HP15_875at 893.662 kb on + strand, within HP15_875at 893.712 kb on - strand, within HP15_875at 893.901 kb on - strand, within HP15_875at 893.944 kb on - strandat 893.978 kb on + strandat 893.995 kb on + strandat 894.010 kb on - strandat 894.030 kb on + strandat 894.062 kb on + strand, within HP15_876at 894.073 kb on + strand, within HP15_876at 894.098 kb on - strand, within HP15_876at 894.406 kb on + strandat 894.413 kb on + strandat 894.414 kb on - strandat 894.418 kb on + strandat 894.433 kb on - strandat 894.459 kb on + strandat 894.470 kb on + strandat 894.470 kb on + strandat 894.470 kb on + strandat 894.470 kb on + strandat 894.478 kb on - strandat 894.478 kb on - strandat 894.478 kb on - strandat 894.478 kb on - strandat 894.487 kb on + strandat 894.601 kb on - strand, within HP15_877at 894.618 kb on - strand, within HP15_877at 894.647 kb on + strand, within HP15_877at 894.647 kb on - strand, within HP15_877at 894.647 kb on - strand, within HP15_877at 894.666 kb on + strand, within HP15_877at 894.733 kb on + strand, within HP15_877at 894.760 kb on - strand, within HP15_877at 894.774 kb on - strand, within HP15_877at 894.784 kb on - strand, within HP15_877at 894.842 kb on - strand, within HP15_877at 894.980 kb on - strand, within HP15_877at 894.991 kb on - strand, within HP15_877at 894.997 kb on + strand, within HP15_877at 894.997 kb on + strand, within HP15_877at 895.017 kb on + strand, within HP15_877at 895.017 kb on + strand, within HP15_877at 895.017 kb on + strand, within HP15_877at 895.017 kb on + strand, within HP15_877at 895.017 kb on + strand, within HP15_877at 895.025 kb on - strand, within HP15_877at 895.025 kb on - strand, within HP15_877at 895.025 kb on - strand, within HP15_877at 895.025 kb on - strand, within HP15_877at 895.114 kb on - strand, within HP15_877at 895.213 kb on + strand, within HP15_877at 895.215 kb on - strand, within HP15_877at 895.236 kb on - strand, within HP15_877at 895.236 kb on - strand, within HP15_877at 895.241 kb on - strand, within HP15_877at 895.374 kb on + strand, within HP15_877at 895.427 kb on + strandat 895.438 kb on + strandat 895.451 kb on - strandat 895.484 kb on - strandat 895.529 kb on + strandat 895.537 kb on - strandat 895.633 kb on - strand, within HP15_878at 895.665 kb on - strand, within HP15_878at 895.665 kb on - strand, within HP15_878at 895.673 kb on + strand, within HP15_878at 895.691 kb on + strand, within HP15_878at 895.741 kb on - strand, within HP15_878at 895.743 kb on - strand, within HP15_878at 895.763 kb on + strand, within HP15_878at 895.851 kb on + strand, within HP15_878at 895.859 kb on - strand, within HP15_878at 895.939 kb on - strandat 895.939 kb on - strandat 896.167 kb on - strand, within HP15_879at 896.294 kb on - strand, within HP15_879at 896.334 kb on + strand, within HP15_879at 896.342 kb on - strand, within HP15_879at 896.385 kb on - strand, within HP15_879at 896.433 kb on + strand, within HP15_879at 896.443 kb on - strand, within HP15_879

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.125 vol%
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893,424 - HP15_875 0.22 -1.4
893,465 + HP15_875 0.27 -0.1
893,471 - HP15_875 0.28 -0.2
893,540 - HP15_875 0.38 -0.9
893,662 + HP15_875 0.55 -0.6
893,712 - HP15_875 0.62 +0.0
893,901 - HP15_875 0.88 +0.6
893,944 - +0.2
893,978 + -0.7
893,995 + +1.5
894,010 - -0.1
894,030 + +0.1
894,062 + HP15_876 0.12 -1.4
894,073 + HP15_876 0.15 +0.4
894,098 - HP15_876 0.21 -0.5
894,406 + +1.0
894,413 + +1.4
894,414 - -0.6
894,418 + -1.5
894,433 - -0.3
894,459 + -0.0
894,470 + -0.7
894,470 + -0.5
894,470 + +0.0
894,470 + +1.6
894,478 - +0.3
894,478 - -0.4
894,478 - -0.2
894,478 - -0.1
894,487 + +0.1
894,601 - HP15_877 0.17 +1.1
894,618 - HP15_877 0.18 +0.7
894,647 + HP15_877 0.21 +0.5
894,647 - HP15_877 0.21 -2.3
894,647 - HP15_877 0.21 -0.4
894,666 + HP15_877 0.23 +1.0
894,733 + HP15_877 0.29 +1.2
894,760 - HP15_877 0.32 -0.1
894,774 - HP15_877 0.33 -0.4
894,784 - HP15_877 0.34 -0.1
894,842 - HP15_877 0.39 +0.5
894,980 - HP15_877 0.52 -0.1
894,991 - HP15_877 0.53 +1.4
894,997 + HP15_877 0.54 +0.3
894,997 + HP15_877 0.54 +0.7
895,017 + HP15_877 0.56 -0.7
895,017 + HP15_877 0.56 +0.4
895,017 + HP15_877 0.56 +0.9
895,017 + HP15_877 0.56 +0.3
895,017 + HP15_877 0.56 +1.5
895,025 - HP15_877 0.56 +0.9
895,025 - HP15_877 0.56 +1.1
895,025 - HP15_877 0.56 +0.0
895,025 - HP15_877 0.56 -1.2
895,114 - HP15_877 0.65 +0.1
895,213 + HP15_877 0.74 +0.4
895,215 - HP15_877 0.74 -0.7
895,236 - HP15_877 0.76 -0.5
895,236 - HP15_877 0.76 -0.9
895,241 - HP15_877 0.77 -0.1
895,374 + HP15_877 0.89 +1.5
895,427 + +0.6
895,438 + +0.8
895,451 - +0.3
895,484 - +0.4
895,529 + +0.9
895,537 - -0.1
895,633 - HP15_878 0.11 -0.0
895,665 - HP15_878 0.20 +0.2
895,665 - HP15_878 0.20 -1.2
895,673 + HP15_878 0.23 +0.9
895,691 + HP15_878 0.28 +1.7
895,741 - HP15_878 0.44 -0.1
895,743 - HP15_878 0.44 +1.9
895,763 + HP15_878 0.50 +0.6
895,851 + HP15_878 0.77 +1.4
895,859 - HP15_878 0.80 -0.3
895,939 - -0.0
895,939 - +1.1
896,167 - HP15_879 0.23 -0.7
896,294 - HP15_879 0.42 -0.3
896,334 + HP15_879 0.48 -0.1
896,342 - HP15_879 0.49 +0.4
896,385 - HP15_879 0.56 -0.5
896,433 + HP15_879 0.63 -0.1
896,443 - HP15_879 0.64 +0.9

Or see this region's nucleotide sequence