Experiment: m.b. Furfuryl Alcohol 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3998 and HP15_3999 overlap by 4 nucleotides HP15_3999 and HP15_4000 are separated by 10 nucleotides
HP15_3998: HP15_3998 - secretion protein HlyD, at 4,228,636 to 4,229,703
_3998
HP15_3999: HP15_3999 - AcrB/AcrD/AcrF family protein, at 4,229,700 to 4,232,930
_3999
HP15_4000: HP15_4000 - GGDEF domain membrane protein, at 4,232,941 to 4,233,996
_4000
Position (kb)
4229
4230
4231
4232
4233 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4228.707 kb on - strand at 4228.810 kb on + strand, within HP15_3998 at 4228.823 kb on + strand, within HP15_3998 at 4228.872 kb on - strand, within HP15_3998 at 4228.885 kb on - strand, within HP15_3998 at 4228.923 kb on + strand, within HP15_3998 at 4228.931 kb on - strand, within HP15_3998 at 4228.934 kb on + strand, within HP15_3998 at 4228.934 kb on + strand, within HP15_3998 at 4228.942 kb on - strand, within HP15_3998 at 4228.944 kb on + strand, within HP15_3998 at 4229.072 kb on - strand, within HP15_3998 at 4229.117 kb on + strand, within HP15_3998 at 4229.117 kb on + strand, within HP15_3998 at 4229.124 kb on - strand, within HP15_3998 at 4229.131 kb on - strand, within HP15_3998 at 4229.229 kb on + strand, within HP15_3998 at 4229.229 kb on + strand, within HP15_3998 at 4229.251 kb on + strand, within HP15_3998 at 4229.251 kb on + strand, within HP15_3998 at 4229.274 kb on - strand, within HP15_3998 at 4229.339 kb on + strand, within HP15_3998 at 4229.494 kb on - strand, within HP15_3998 at 4229.546 kb on + strand, within HP15_3998 at 4229.554 kb on - strand, within HP15_3998 at 4229.636 kb on + strand at 4229.661 kb on + strand at 4229.896 kb on + strand at 4229.979 kb on - strand at 4229.990 kb on - strand at 4230.039 kb on + strand, within HP15_3999 at 4230.057 kb on + strand, within HP15_3999 at 4230.124 kb on - strand, within HP15_3999 at 4230.130 kb on - strand, within HP15_3999 at 4230.195 kb on + strand, within HP15_3999 at 4230.205 kb on + strand, within HP15_3999 at 4230.217 kb on + strand, within HP15_3999 at 4230.226 kb on - strand, within HP15_3999 at 4230.258 kb on + strand, within HP15_3999 at 4230.427 kb on - strand, within HP15_3999 at 4230.487 kb on + strand, within HP15_3999 at 4230.503 kb on + strand, within HP15_3999 at 4230.608 kb on + strand, within HP15_3999 at 4230.696 kb on - strand, within HP15_3999 at 4230.774 kb on - strand, within HP15_3999 at 4230.800 kb on - strand, within HP15_3999 at 4230.802 kb on + strand, within HP15_3999 at 4230.807 kb on + strand, within HP15_3999 at 4230.822 kb on - strand, within HP15_3999 at 4230.856 kb on - strand, within HP15_3999 at 4230.863 kb on - strand, within HP15_3999 at 4230.884 kb on - strand, within HP15_3999 at 4230.937 kb on + strand, within HP15_3999 at 4230.956 kb on + strand, within HP15_3999 at 4230.964 kb on - strand, within HP15_3999 at 4231.057 kb on - strand, within HP15_3999 at 4231.074 kb on - strand, within HP15_3999 at 4231.097 kb on - strand, within HP15_3999 at 4231.202 kb on + strand, within HP15_3999 at 4231.210 kb on - strand, within HP15_3999 at 4231.248 kb on - strand, within HP15_3999 at 4231.472 kb on - strand, within HP15_3999 at 4231.530 kb on + strand, within HP15_3999 at 4231.530 kb on + strand, within HP15_3999 at 4231.530 kb on - strand, within HP15_3999 at 4231.538 kb on - strand, within HP15_3999 at 4231.538 kb on - strand, within HP15_3999 at 4231.662 kb on - strand, within HP15_3999 at 4231.681 kb on + strand, within HP15_3999 at 4231.837 kb on - strand, within HP15_3999 at 4231.837 kb on - strand, within HP15_3999 at 4231.853 kb on - strand, within HP15_3999 at 4231.939 kb on + strand, within HP15_3999 at 4231.945 kb on + strand, within HP15_3999 at 4231.965 kb on - strand, within HP15_3999 at 4231.974 kb on + strand, within HP15_3999 at 4231.983 kb on + strand at 4231.996 kb on + strand, within HP15_3999 at 4232.002 kb on + strand, within HP15_3999 at 4232.016 kb on - strand, within HP15_3999 at 4232.054 kb on - strand, within HP15_3999 at 4232.063 kb on + strand, within HP15_3999 at 4232.108 kb on - strand, within HP15_3999 at 4232.387 kb on - strand, within HP15_3999 at 4232.410 kb on - strand, within HP15_3999 at 4232.416 kb on - strand, within HP15_3999 at 4232.516 kb on - strand, within HP15_3999 at 4232.643 kb on + strand at 4232.695 kb on + strand at 4232.738 kb on - strand at 4232.750 kb on + strand at 4232.753 kb on - strand at 4232.784 kb on + strand at 4233.024 kb on - strand at 4233.048 kb on + strand, within HP15_4000 at 4233.058 kb on + strand, within HP15_4000 at 4233.067 kb on + strand, within HP15_4000 at 4233.075 kb on - strand, within HP15_4000 at 4233.289 kb on + strand, within HP15_4000 at 4233.322 kb on - strand, within HP15_4000 at 4233.322 kb on - strand, within HP15_4000 at 4233.527 kb on + strand, within HP15_4000 at 4233.562 kb on - strand, within HP15_4000 at 4233.666 kb on - strand, within HP15_4000 at 4233.716 kb on + strand, within HP15_4000
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.125 vol% remove 4,228,707 - +1.5 4,228,810 + HP15_3998 0.16 +0.9 4,228,823 + HP15_3998 0.18 -0.6 4,228,872 - HP15_3998 0.22 +0.4 4,228,885 - HP15_3998 0.23 -0.6 4,228,923 + HP15_3998 0.27 +0.2 4,228,931 - HP15_3998 0.28 +0.8 4,228,934 + HP15_3998 0.28 +0.9 4,228,934 + HP15_3998 0.28 +0.4 4,228,942 - HP15_3998 0.29 -0.5 4,228,944 + HP15_3998 0.29 +0.6 4,229,072 - HP15_3998 0.41 +1.0 4,229,117 + HP15_3998 0.45 -0.3 4,229,117 + HP15_3998 0.45 -0.6 4,229,124 - HP15_3998 0.46 -0.8 4,229,131 - HP15_3998 0.46 +0.8 4,229,229 + HP15_3998 0.56 -0.1 4,229,229 + HP15_3998 0.56 +0.1 4,229,251 + HP15_3998 0.58 -0.5 4,229,251 + HP15_3998 0.58 -0.4 4,229,274 - HP15_3998 0.60 -0.6 4,229,339 + HP15_3998 0.66 +0.1 4,229,494 - HP15_3998 0.80 +0.1 4,229,546 + HP15_3998 0.85 +0.6 4,229,554 - HP15_3998 0.86 +0.5 4,229,636 + +1.0 4,229,661 + +0.1 4,229,896 + +3.4 4,229,979 - -0.1 4,229,990 - -0.5 4,230,039 + HP15_3999 0.10 -0.5 4,230,057 + HP15_3999 0.11 +0.7 4,230,124 - HP15_3999 0.13 +0.3 4,230,130 - HP15_3999 0.13 +0.1 4,230,195 + HP15_3999 0.15 -0.2 4,230,205 + HP15_3999 0.16 -0.3 4,230,217 + HP15_3999 0.16 +0.7 4,230,226 - HP15_3999 0.16 +0.2 4,230,258 + HP15_3999 0.17 +0.0 4,230,427 - HP15_3999 0.23 +0.2 4,230,487 + HP15_3999 0.24 -0.5 4,230,503 + HP15_3999 0.25 -0.4 4,230,608 + HP15_3999 0.28 +0.5 4,230,696 - HP15_3999 0.31 +0.3 4,230,774 - HP15_3999 0.33 -0.2 4,230,800 - HP15_3999 0.34 +0.5 4,230,802 + HP15_3999 0.34 -0.2 4,230,807 + HP15_3999 0.34 +0.1 4,230,822 - HP15_3999 0.35 +1.4 4,230,856 - HP15_3999 0.36 -0.2 4,230,863 - HP15_3999 0.36 +1.0 4,230,884 - HP15_3999 0.37 -0.2 4,230,937 + HP15_3999 0.38 +0.1 4,230,956 + HP15_3999 0.39 -0.1 4,230,964 - HP15_3999 0.39 +0.1 4,231,057 - HP15_3999 0.42 +1.5 4,231,074 - HP15_3999 0.43 +0.1 4,231,097 - HP15_3999 0.43 -0.7 4,231,202 + HP15_3999 0.46 -0.3 4,231,210 - HP15_3999 0.47 -0.2 4,231,248 - HP15_3999 0.48 -0.4 4,231,472 - HP15_3999 0.55 +0.7 4,231,530 + HP15_3999 0.57 +0.1 4,231,530 + HP15_3999 0.57 +0.8 4,231,530 - HP15_3999 0.57 +0.2 4,231,538 - HP15_3999 0.57 +0.3 4,231,538 - HP15_3999 0.57 +0.1 4,231,662 - HP15_3999 0.61 +1.1 4,231,681 + HP15_3999 0.61 +0.6 4,231,837 - HP15_3999 0.66 +0.0 4,231,837 - HP15_3999 0.66 +1.7 4,231,853 - HP15_3999 0.67 -0.4 4,231,939 + HP15_3999 0.69 +0.2 4,231,945 + HP15_3999 0.69 +0.7 4,231,965 - HP15_3999 0.70 +0.2 4,231,974 + HP15_3999 0.70 +0.1 4,231,983 + -1.0 4,231,996 + HP15_3999 0.71 -0.2 4,232,002 + HP15_3999 0.71 -0.8 4,232,016 - HP15_3999 0.72 +1.3 4,232,054 - HP15_3999 0.73 +0.3 4,232,063 + HP15_3999 0.73 +0.3 4,232,108 - HP15_3999 0.75 -0.5 4,232,387 - HP15_3999 0.83 +1.6 4,232,410 - HP15_3999 0.84 +2.0 4,232,416 - HP15_3999 0.84 -1.0 4,232,516 - HP15_3999 0.87 +0.3 4,232,643 + +0.3 4,232,695 + -0.9 4,232,738 - +0.9 4,232,750 + +0.0 4,232,753 - -0.7 4,232,784 + +0.7 4,233,024 - -0.3 4,233,048 + HP15_4000 0.10 -0.0 4,233,058 + HP15_4000 0.11 +0.7 4,233,067 + HP15_4000 0.12 +1.0 4,233,075 - HP15_4000 0.13 -0.2 4,233,289 + HP15_4000 0.33 -0.0 4,233,322 - HP15_4000 0.36 -0.3 4,233,322 - HP15_4000 0.36 -0.6 4,233,527 + HP15_4000 0.55 -0.4 4,233,562 - HP15_4000 0.59 -0.5 4,233,666 - HP15_4000 0.69 +0.8 4,233,716 + HP15_4000 0.73 +1.9
Or see this region's nucleotide sequence