Experiment: m-Inositol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01750 and PGA1_262p01760 are separated by 26 nucleotides PGA1_262p01760 and PGA1_262p01770 are separated by 62 nucleotides PGA1_262p01770 and PGA1_262p01780 are separated by 121 nucleotides
PGA1_262p01750: PGA1_262p01750 - putative amidohydrolase, at 191,746 to 193,389
_262p01750
PGA1_262p01760: PGA1_262p01760 - epoxide hydrolase, similar to eukaryotic, at 193,416 to 194,588
_262p01760
PGA1_262p01770: PGA1_262p01770 - putative endoribonuclease, at 194,651 to 194,992
_262p01770
PGA1_262p01780: PGA1_262p01780 - transcriptional regulator, LysR family, at 195,114 to 196,019
_262p01780
Position (kb) 193
194
195 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 192.446 kb on + strand, within PGA1_262p01750 at 192.560 kb on + strand, within PGA1_262p01750 at 192.560 kb on + strand, within PGA1_262p01750 at 192.629 kb on + strand, within PGA1_262p01750 at 192.637 kb on - strand, within PGA1_262p01750 at 192.637 kb on - strand, within PGA1_262p01750 at 192.668 kb on + strand, within PGA1_262p01750 at 192.876 kb on - strand, within PGA1_262p01750 at 192.878 kb on + strand, within PGA1_262p01750 at 192.878 kb on + strand, within PGA1_262p01750 at 192.878 kb on + strand, within PGA1_262p01750 at 192.886 kb on - strand, within PGA1_262p01750 at 192.886 kb on - strand, within PGA1_262p01750 at 192.917 kb on + strand, within PGA1_262p01750 at 192.917 kb on + strand, within PGA1_262p01750 at 192.991 kb on + strand, within PGA1_262p01750 at 193.202 kb on - strand, within PGA1_262p01750 at 193.305 kb on - strand at 193.351 kb on - strand at 193.620 kb on - strand, within PGA1_262p01760 at 193.677 kb on - strand, within PGA1_262p01760 at 193.772 kb on + strand, within PGA1_262p01760 at 193.779 kb on + strand, within PGA1_262p01760 at 193.792 kb on - strand, within PGA1_262p01760 at 193.799 kb on + strand, within PGA1_262p01760 at 193.882 kb on + strand, within PGA1_262p01760 at 193.928 kb on - strand, within PGA1_262p01760 at 193.951 kb on + strand, within PGA1_262p01760 at 193.951 kb on + strand, within PGA1_262p01760 at 193.973 kb on + strand, within PGA1_262p01760 at 193.987 kb on + strand, within PGA1_262p01760 at 194.095 kb on - strand, within PGA1_262p01760 at 194.095 kb on - strand, within PGA1_262p01760 at 194.164 kb on + strand, within PGA1_262p01760 at 194.172 kb on - strand, within PGA1_262p01760 at 194.302 kb on + strand, within PGA1_262p01760 at 194.321 kb on + strand, within PGA1_262p01760 at 194.403 kb on + strand, within PGA1_262p01760 at 194.414 kb on - strand, within PGA1_262p01760 at 194.446 kb on - strand, within PGA1_262p01760 at 194.456 kb on + strand, within PGA1_262p01760 at 194.456 kb on + strand, within PGA1_262p01760 at 194.456 kb on + strand, within PGA1_262p01760 at 194.459 kb on - strand, within PGA1_262p01760 at 194.464 kb on - strand, within PGA1_262p01760 at 194.464 kb on - strand, within PGA1_262p01760 at 194.464 kb on - strand, within PGA1_262p01760 at 194.486 kb on + strand at 194.615 kb on + strand at 194.623 kb on - strand at 194.712 kb on - strand, within PGA1_262p01770 at 194.835 kb on + strand, within PGA1_262p01770 at 194.846 kb on + strand, within PGA1_262p01770 at 194.854 kb on - strand, within PGA1_262p01770 at 194.854 kb on - strand, within PGA1_262p01770 at 194.865 kb on - strand, within PGA1_262p01770 at 194.876 kb on + strand, within PGA1_262p01770 at 194.876 kb on + strand, within PGA1_262p01770 at 194.876 kb on + strand, within PGA1_262p01770 at 194.906 kb on - strand, within PGA1_262p01770 at 194.912 kb on + strand, within PGA1_262p01770 at 194.937 kb on + strand, within PGA1_262p01770 at 194.942 kb on - strand, within PGA1_262p01770 at 194.973 kb on + strand at 195.026 kb on - strand at 195.038 kb on + strand at 195.046 kb on + strand at 195.124 kb on + strand at 195.132 kb on - strand at 195.132 kb on - strand at 195.134 kb on + strand at 195.134 kb on + strand at 195.159 kb on + strand at 195.173 kb on + strand at 195.173 kb on + strand at 195.181 kb on - strand at 195.181 kb on - strand at 195.181 kb on - strand at 195.260 kb on + strand, within PGA1_262p01780 at 195.268 kb on - strand, within PGA1_262p01780 at 195.527 kb on - strand, within PGA1_262p01780 at 195.588 kb on + strand, within PGA1_262p01780
Per-strain Table
Position Strand Gene LocusTag Fraction m-Inositol (C) remove 192,446 + PGA1_262p01750 0.43 -0.4 192,560 + PGA1_262p01750 0.50 +0.1 192,560 + PGA1_262p01750 0.50 -0.5 192,629 + PGA1_262p01750 0.54 +0.9 192,637 - PGA1_262p01750 0.54 -1.0 192,637 - PGA1_262p01750 0.54 +1.0 192,668 + PGA1_262p01750 0.56 -1.2 192,876 - PGA1_262p01750 0.69 +0.1 192,878 + PGA1_262p01750 0.69 -3.4 192,878 + PGA1_262p01750 0.69 +0.6 192,878 + PGA1_262p01750 0.69 -0.6 192,886 - PGA1_262p01750 0.69 -2.0 192,886 - PGA1_262p01750 0.69 +0.8 192,917 + PGA1_262p01750 0.71 -2.7 192,917 + PGA1_262p01750 0.71 +1.1 192,991 + PGA1_262p01750 0.76 -0.8 193,202 - PGA1_262p01750 0.89 -1.0 193,305 - -0.1 193,351 - -1.2 193,620 - PGA1_262p01760 0.17 -2.9 193,677 - PGA1_262p01760 0.22 +3.2 193,772 + PGA1_262p01760 0.30 -0.3 193,779 + PGA1_262p01760 0.31 -2.0 193,792 - PGA1_262p01760 0.32 +0.1 193,799 + PGA1_262p01760 0.33 -3.0 193,882 + PGA1_262p01760 0.40 -0.2 193,928 - PGA1_262p01760 0.44 -1.0 193,951 + PGA1_262p01760 0.46 -1.0 193,951 + PGA1_262p01760 0.46 -0.6 193,973 + PGA1_262p01760 0.47 +0.9 193,987 + PGA1_262p01760 0.49 -1.2 194,095 - PGA1_262p01760 0.58 +0.6 194,095 - PGA1_262p01760 0.58 -0.7 194,164 + PGA1_262p01760 0.64 -2.2 194,172 - PGA1_262p01760 0.64 +0.4 194,302 + PGA1_262p01760 0.76 +0.2 194,321 + PGA1_262p01760 0.77 +0.3 194,403 + PGA1_262p01760 0.84 -1.1 194,414 - PGA1_262p01760 0.85 -2.3 194,446 - PGA1_262p01760 0.88 -1.8 194,456 + PGA1_262p01760 0.89 +0.2 194,456 + PGA1_262p01760 0.89 +1.5 194,456 + PGA1_262p01760 0.89 -1.6 194,459 - PGA1_262p01760 0.89 +0.3 194,464 - PGA1_262p01760 0.89 -2.5 194,464 - PGA1_262p01760 0.89 +1.4 194,464 - PGA1_262p01760 0.89 -2.1 194,486 + -3.0 194,615 + -2.0 194,623 - +2.0 194,712 - PGA1_262p01770 0.18 +2.2 194,835 + PGA1_262p01770 0.54 +1.0 194,846 + PGA1_262p01770 0.57 -0.0 194,854 - PGA1_262p01770 0.59 -1.1 194,854 - PGA1_262p01770 0.59 -1.8 194,865 - PGA1_262p01770 0.63 +0.3 194,876 + PGA1_262p01770 0.66 +0.9 194,876 + PGA1_262p01770 0.66 +1.5 194,876 + PGA1_262p01770 0.66 -0.8 194,906 - PGA1_262p01770 0.75 +1.2 194,912 + PGA1_262p01770 0.76 +0.1 194,937 + PGA1_262p01770 0.84 +1.0 194,942 - PGA1_262p01770 0.85 +1.4 194,973 + -0.4 195,026 - +2.0 195,038 + +0.9 195,046 + -1.6 195,124 + -0.7 195,132 - -2.0 195,132 - +0.6 195,134 + -0.2 195,134 + +0.6 195,159 + -1.0 195,173 + +0.4 195,173 + +0.8 195,181 - +0.6 195,181 - +1.4 195,181 - -0.1 195,260 + PGA1_262p01780 0.16 -0.2 195,268 - PGA1_262p01780 0.17 +0.6 195,527 - PGA1_262p01780 0.46 +0.6 195,588 + PGA1_262p01780 0.52 -0.2
Or see this region's nucleotide sequence