Strain Fitness in Marinobacter adhaerens HP15 around HP15_3051

Experiment: m.b. Furfuryl Alcohol 0.125 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3047 and HP15_3048 are separated by 56 nucleotidesHP15_3048 and HP15_3049 are separated by 63 nucleotidesHP15_3049 and HP15_3051 are separated by 85 nucleotidesHP15_3051 and HP15_3050 overlap by 26 nucleotidesHP15_3050 and HP15_3052 are separated by 104 nucleotides HP15_3047: HP15_3047 - lysine 2,3-aminomutase-like protein, at 3,198,365 to 3,199,729 _3047 HP15_3048: HP15_3048 - membrane protein, at 3,199,786 to 3,200,019 _3048 HP15_3049: HP15_3049 - conserved hypothetical protein, at 3,200,083 to 3,200,409 _3049 HP15_3051: HP15_3051 - thioredoxin domain-containing protein, at 3,200,495 to 3,201,358 _3051 HP15_3050: HP15_3050 - hypothetical protein, at 3,201,333 to 3,201,446 _3050 HP15_3052: HP15_3052 - ATP-dependent protease La-like protein, at 3,201,551 to 3,204,016 _3052 Position (kb) 3200 3201 3202Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3199.551 kb on + strand, within HP15_3047at 3199.551 kb on + strand, within HP15_3047at 3199.573 kb on - strand, within HP15_3047at 3199.609 kb on - strandat 3199.736 kb on + strandat 3199.838 kb on + strand, within HP15_3048at 3199.846 kb on - strand, within HP15_3048at 3199.846 kb on - strand, within HP15_3048at 3199.891 kb on + strand, within HP15_3048at 3199.906 kb on - strand, within HP15_3048at 3199.967 kb on - strand, within HP15_3048at 3200.115 kb on + strandat 3200.121 kb on - strand, within HP15_3049at 3200.123 kb on - strand, within HP15_3049at 3200.123 kb on - strand, within HP15_3049at 3200.125 kb on + strand, within HP15_3049at 3200.134 kb on - strand, within HP15_3049at 3200.191 kb on - strand, within HP15_3049at 3200.204 kb on - strand, within HP15_3049at 3200.243 kb on + strand, within HP15_3049at 3200.244 kb on - strand, within HP15_3049at 3200.253 kb on + strand, within HP15_3049at 3200.261 kb on - strand, within HP15_3049at 3200.277 kb on - strand, within HP15_3049at 3200.341 kb on - strand, within HP15_3049at 3200.381 kb on - strandat 3200.508 kb on + strandat 3200.516 kb on - strandat 3200.536 kb on - strandat 3200.547 kb on + strandat 3200.555 kb on - strandat 3200.586 kb on - strand, within HP15_3051at 3200.591 kb on - strand, within HP15_3051at 3200.591 kb on - strand, within HP15_3051at 3200.591 kb on - strand, within HP15_3051at 3200.601 kb on - strand, within HP15_3051at 3200.670 kb on - strand, within HP15_3051at 3200.717 kb on - strand, within HP15_3051at 3200.773 kb on - strand, within HP15_3051at 3200.805 kb on - strand, within HP15_3051at 3200.824 kb on - strand, within HP15_3051at 3200.827 kb on + strand, within HP15_3051at 3200.953 kb on + strand, within HP15_3051at 3200.965 kb on - strand, within HP15_3051at 3201.032 kb on + strand, within HP15_3051at 3201.040 kb on - strand, within HP15_3051at 3201.040 kb on - strand, within HP15_3051at 3201.069 kb on + strand, within HP15_3051at 3201.077 kb on - strand, within HP15_3051at 3201.125 kb on + strand, within HP15_3051at 3201.130 kb on + strand, within HP15_3051at 3201.130 kb on + strand, within HP15_3051at 3201.130 kb on + strand, within HP15_3051at 3201.136 kb on + strand, within HP15_3051at 3201.138 kb on - strand, within HP15_3051at 3201.149 kb on - strand, within HP15_3051at 3201.173 kb on - strand, within HP15_3051at 3201.203 kb on - strand, within HP15_3051at 3201.224 kb on + strand, within HP15_3051at 3201.225 kb on + strand, within HP15_3051at 3201.248 kb on + strand, within HP15_3051at 3201.651 kb on + strandat 3201.651 kb on + strandat 3201.651 kb on + strandat 3201.659 kb on - strandat 3201.659 kb on - strandat 3201.659 kb on - strandat 3201.659 kb on - strandat 3201.709 kb on - strandat 3201.758 kb on - strandat 3201.771 kb on + strandat 3201.810 kb on - strand, within HP15_3052at 3201.871 kb on - strand, within HP15_3052at 3201.904 kb on - strand, within HP15_3052at 3201.922 kb on + strand, within HP15_3052at 3202.034 kb on + strand, within HP15_3052at 3202.046 kb on + strand, within HP15_3052at 3202.054 kb on - strand, within HP15_3052at 3202.127 kb on - strand, within HP15_3052at 3202.152 kb on - strand, within HP15_3052at 3202.224 kb on + strand, within HP15_3052at 3202.267 kb on + strand, within HP15_3052at 3202.315 kb on + strand, within HP15_3052

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.125 vol%
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3,199,551 + HP15_3047 0.87 +0.5
3,199,551 + HP15_3047 0.87 -1.3
3,199,573 - HP15_3047 0.88 -0.3
3,199,609 - +0.3
3,199,736 + -0.1
3,199,838 + HP15_3048 0.22 -0.2
3,199,846 - HP15_3048 0.26 +0.3
3,199,846 - HP15_3048 0.26 -0.2
3,199,891 + HP15_3048 0.45 -0.1
3,199,906 - HP15_3048 0.51 -0.0
3,199,967 - HP15_3048 0.77 +0.3
3,200,115 + -0.3
3,200,121 - HP15_3049 0.12 -0.1
3,200,123 - HP15_3049 0.12 -0.7
3,200,123 - HP15_3049 0.12 -0.8
3,200,125 + HP15_3049 0.13 +0.4
3,200,134 - HP15_3049 0.16 +0.3
3,200,191 - HP15_3049 0.33 -0.3
3,200,204 - HP15_3049 0.37 +0.8
3,200,243 + HP15_3049 0.49 -0.0
3,200,244 - HP15_3049 0.49 -0.8
3,200,253 + HP15_3049 0.52 -0.6
3,200,261 - HP15_3049 0.54 -0.4
3,200,277 - HP15_3049 0.59 -0.3
3,200,341 - HP15_3049 0.79 +0.6
3,200,381 - +0.3
3,200,508 + -0.5
3,200,516 - +0.4
3,200,536 - -0.4
3,200,547 + +0.6
3,200,555 - -0.0
3,200,586 - HP15_3051 0.11 -0.4
3,200,591 - HP15_3051 0.11 -0.9
3,200,591 - HP15_3051 0.11 -1.8
3,200,591 - HP15_3051 0.11 -0.8
3,200,601 - HP15_3051 0.12 -0.0
3,200,670 - HP15_3051 0.20 -0.1
3,200,717 - HP15_3051 0.26 -0.3
3,200,773 - HP15_3051 0.32 -0.9
3,200,805 - HP15_3051 0.36 +0.0
3,200,824 - HP15_3051 0.38 +0.6
3,200,827 + HP15_3051 0.38 +2.0
3,200,953 + HP15_3051 0.53 -1.1
3,200,965 - HP15_3051 0.54 -0.2
3,201,032 + HP15_3051 0.62 -0.6
3,201,040 - HP15_3051 0.63 +0.7
3,201,040 - HP15_3051 0.63 -0.6
3,201,069 + HP15_3051 0.66 -0.9
3,201,077 - HP15_3051 0.67 +0.6
3,201,125 + HP15_3051 0.73 +0.1
3,201,130 + HP15_3051 0.73 -0.8
3,201,130 + HP15_3051 0.73 -0.4
3,201,130 + HP15_3051 0.73 -0.5
3,201,136 + HP15_3051 0.74 -0.5
3,201,138 - HP15_3051 0.74 -0.5
3,201,149 - HP15_3051 0.76 +0.3
3,201,173 - HP15_3051 0.78 +0.3
3,201,203 - HP15_3051 0.82 +1.4
3,201,224 + HP15_3051 0.84 +0.8
3,201,225 + HP15_3051 0.84 -0.4
3,201,248 + HP15_3051 0.87 -0.9
3,201,651 + +0.4
3,201,651 + -0.7
3,201,651 + +0.5
3,201,659 - +0.9
3,201,659 - +0.5
3,201,659 - +0.2
3,201,659 - +3.0
3,201,709 - -0.1
3,201,758 - +0.9
3,201,771 + +1.0
3,201,810 - HP15_3052 0.11 +0.2
3,201,871 - HP15_3052 0.13 +0.1
3,201,904 - HP15_3052 0.14 -0.3
3,201,922 + HP15_3052 0.15 +1.1
3,202,034 + HP15_3052 0.20 -0.4
3,202,046 + HP15_3052 0.20 +1.1
3,202,054 - HP15_3052 0.20 +0.7
3,202,127 - HP15_3052 0.23 +0.1
3,202,152 - HP15_3052 0.24 +0.3
3,202,224 + HP15_3052 0.27 +0.5
3,202,267 + HP15_3052 0.29 +0.2
3,202,315 + HP15_3052 0.31 +0.5

Or see this region's nucleotide sequence