Strain Fitness in Marinobacter adhaerens HP15 around HP15_2920

Experiment: m.b. Furfuryl Alcohol 0.125 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2918 and HP15_2919 are separated by 91 nucleotidesHP15_2919 and HP15_2920 are separated by 13 nucleotidesHP15_2920 and HP15_2921 are separated by 68 nucleotidesHP15_2921 and HP15_2922 are separated by 62 nucleotides HP15_2918: HP15_2918 - glutamine ABC transporter, periplasmic glutamine-binding protein, at 3,057,858 to 3,058,616 _2918 HP15_2919: HP15_2919 - amino acid ABC transporter, permease protein, at 3,058,708 to 3,059,379 _2919 HP15_2920: HP15_2920 - amino acid ABC transporter, ATP-binding protein, at 3,059,393 to 3,060,139 _2920 HP15_2921: HP15_2921 - prophage CP4-57 regulatory, at 3,060,208 to 3,060,630 _2921 HP15_2922: HP15_2922 - hypothetical protein, at 3,060,693 to 3,060,977 _2922 Position (kb) 3059 3060 3061Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3058.400 kb on - strand, within HP15_2918at 3058.402 kb on - strand, within HP15_2918at 3058.430 kb on + strand, within HP15_2918at 3058.451 kb on - strand, within HP15_2918at 3058.484 kb on - strand, within HP15_2918at 3058.512 kb on - strand, within HP15_2918at 3058.553 kb on + strandat 3058.636 kb on - strandat 3058.681 kb on + strandat 3058.689 kb on - strandat 3058.689 kb on - strandat 3058.776 kb on + strand, within HP15_2919at 3058.784 kb on - strand, within HP15_2919at 3058.913 kb on + strand, within HP15_2919at 3059.041 kb on + strand, within HP15_2919at 3059.058 kb on - strand, within HP15_2919at 3059.087 kb on + strand, within HP15_2919at 3059.092 kb on + strand, within HP15_2919at 3059.101 kb on - strand, within HP15_2919at 3059.101 kb on - strand, within HP15_2919at 3059.189 kb on + strandat 3059.250 kb on + strand, within HP15_2919at 3059.258 kb on - strand, within HP15_2919at 3059.302 kb on + strand, within HP15_2919at 3059.323 kb on - strandat 3059.333 kb on - strandat 3059.339 kb on - strandat 3059.356 kb on - strandat 3059.374 kb on + strandat 3059.378 kb on + strandat 3059.384 kb on + strandat 3059.469 kb on + strand, within HP15_2920at 3059.469 kb on + strand, within HP15_2920at 3059.477 kb on - strand, within HP15_2920at 3059.487 kb on - strand, within HP15_2920at 3059.492 kb on - strand, within HP15_2920at 3059.494 kb on - strand, within HP15_2920at 3059.547 kb on + strand, within HP15_2920at 3059.547 kb on + strand, within HP15_2920at 3059.614 kb on + strand, within HP15_2920at 3059.722 kb on + strand, within HP15_2920at 3059.752 kb on + strand, within HP15_2920at 3059.778 kb on + strand, within HP15_2920at 3059.786 kb on - strand, within HP15_2920at 3059.831 kb on + strand, within HP15_2920at 3059.831 kb on + strand, within HP15_2920at 3059.837 kb on - strand, within HP15_2920at 3059.865 kb on + strand, within HP15_2920at 3059.901 kb on + strand, within HP15_2920at 3059.941 kb on - strand, within HP15_2920at 3059.956 kb on + strand, within HP15_2920at 3060.006 kb on + strand, within HP15_2920at 3060.014 kb on - strand, within HP15_2920at 3060.053 kb on - strand, within HP15_2920at 3060.133 kb on + strandat 3060.223 kb on - strandat 3060.276 kb on + strand, within HP15_2921at 3060.354 kb on - strand, within HP15_2921at 3060.490 kb on + strand, within HP15_2921at 3060.497 kb on - strand, within HP15_2921at 3060.565 kb on - strand, within HP15_2921at 3060.584 kb on - strand, within HP15_2921at 3060.682 kb on - strandat 3060.806 kb on + strand, within HP15_2922at 3060.943 kb on - strand, within HP15_2922at 3060.969 kb on - strandat 3061.048 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.125 vol%
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3,058,400 - HP15_2918 0.71 -0.0
3,058,402 - HP15_2918 0.72 +2.5
3,058,430 + HP15_2918 0.75 -0.1
3,058,451 - HP15_2918 0.78 +0.1
3,058,484 - HP15_2918 0.82 -1.1
3,058,512 - HP15_2918 0.86 -0.7
3,058,553 + -0.3
3,058,636 - -0.2
3,058,681 + -3.0
3,058,689 - -0.6
3,058,689 - -0.2
3,058,776 + HP15_2919 0.10 -0.6
3,058,784 - HP15_2919 0.11 -0.7
3,058,913 + HP15_2919 0.31 -0.5
3,059,041 + HP15_2919 0.50 -1.1
3,059,058 - HP15_2919 0.52 -0.5
3,059,087 + HP15_2919 0.56 -0.8
3,059,092 + HP15_2919 0.57 +1.9
3,059,101 - HP15_2919 0.58 +0.1
3,059,101 - HP15_2919 0.58 -0.0
3,059,189 + -1.3
3,059,250 + HP15_2919 0.81 +1.5
3,059,258 - HP15_2919 0.82 +0.6
3,059,302 + HP15_2919 0.88 -0.0
3,059,323 - +0.4
3,059,333 - +0.3
3,059,339 - -0.2
3,059,356 - +0.7
3,059,374 + -0.8
3,059,378 + +1.0
3,059,384 + -1.3
3,059,469 + HP15_2920 0.10 -0.2
3,059,469 + HP15_2920 0.10 +0.1
3,059,477 - HP15_2920 0.11 -0.3
3,059,487 - HP15_2920 0.13 -0.1
3,059,492 - HP15_2920 0.13 +0.2
3,059,494 - HP15_2920 0.14 -0.7
3,059,547 + HP15_2920 0.21 -0.2
3,059,547 + HP15_2920 0.21 -0.0
3,059,614 + HP15_2920 0.30 -0.9
3,059,722 + HP15_2920 0.44 -0.0
3,059,752 + HP15_2920 0.48 -1.0
3,059,778 + HP15_2920 0.52 +0.6
3,059,786 - HP15_2920 0.53 +1.4
3,059,831 + HP15_2920 0.59 +0.4
3,059,831 + HP15_2920 0.59 -0.0
3,059,837 - HP15_2920 0.59 -0.2
3,059,865 + HP15_2920 0.63 +0.6
3,059,901 + HP15_2920 0.68 +0.4
3,059,941 - HP15_2920 0.73 -0.0
3,059,956 + HP15_2920 0.75 +2.9
3,060,006 + HP15_2920 0.82 +0.6
3,060,014 - HP15_2920 0.83 -0.0
3,060,053 - HP15_2920 0.88 +1.0
3,060,133 + +1.0
3,060,223 - +0.1
3,060,276 + HP15_2921 0.16 -0.8
3,060,354 - HP15_2921 0.35 +1.0
3,060,490 + HP15_2921 0.67 -0.4
3,060,497 - HP15_2921 0.68 +0.2
3,060,565 - HP15_2921 0.84 +3.0
3,060,584 - HP15_2921 0.89 +0.1
3,060,682 - +0.3
3,060,806 + HP15_2922 0.40 -0.4
3,060,943 - HP15_2922 0.88 +0.3
3,060,969 - -0.4
3,061,048 + -0.4

Or see this region's nucleotide sequence