Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c28600

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c28570 and PGA1_c28600 are separated by 965 nucleotidesPGA1_c28600 and PGA1_c28610 are separated by 145 nucleotidesPGA1_c28610 and PGA1_c28620 are separated by 113 nucleotides PGA1_c28570: PGA1_c28570 - hypothetical protein, at 2,993,929 to 2,994,333 _c28570 PGA1_c28600: PGA1_c28600 - tRNA-Met, at 2,995,299 to 2,995,375 _c28600 PGA1_c28610: PGA1_c28610 - 5S ribosomal RNA, at 2,995,521 to 2,995,634 _c28610 PGA1_c28620: PGA1_c28620 - 23S ribosomal RNA, at 2,995,748 to 2,998,573 _c28620 Position (kb) 2995 2996Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2994.951 kb on + strandat 2994.987 kb on + strandat 2995.009 kb on - strandat 2995.089 kb on + strandat 2995.140 kb on + strandat 2995.147 kb on + strandat 2995.208 kb on - strandat 2995.231 kb on - strandat 2995.358 kb on + strand, within PGA1_c28600at 2995.363 kb on + strand, within PGA1_c28600at 2995.363 kb on + strand, within PGA1_c28600at 2995.363 kb on + strand, within PGA1_c28600at 2995.363 kb on + strand, within PGA1_c28600at 2995.363 kb on + strand, within PGA1_c28600at 2995.398 kb on - strandat 2995.398 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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2,994,951 + +0.1
2,994,987 + -2.6
2,995,009 - +0.3
2,995,089 + +0.6
2,995,140 + +0.3
2,995,147 + +0.5
2,995,208 - -0.2
2,995,231 - -1.7
2,995,358 + PGA1_c28600 0.77 +0.1
2,995,363 + PGA1_c28600 0.83 +1.3
2,995,363 + PGA1_c28600 0.83 -1.3
2,995,363 + PGA1_c28600 0.83 +1.8
2,995,363 + PGA1_c28600 0.83 +3.6
2,995,363 + PGA1_c28600 0.83 +1.7
2,995,398 - -0.0
2,995,398 - -0.5

Or see this region's nucleotide sequence