Strain Fitness in Marinobacter adhaerens HP15 around HP15_2547

Experiment: m.b. Furfuryl Alcohol 0.125 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2545 and HP15_2546 are separated by 146 nucleotidesHP15_2546 and HP15_2547 are separated by 202 nucleotidesHP15_2547 and HP15_2548 are separated by 151 nucleotides HP15_2545: HP15_2545 - oxidoreductase, zinc-binding dehydrogenase family protein, at 2,691,846 to 2,692,826 _2545 HP15_2546: HP15_2546 - BLUF domain protein, at 2,692,973 to 2,693,530 _2546 HP15_2547: HP15_2547 - membrane protein containing uncharacterized protein family UPF0126 domains, at 2,693,733 to 2,694,350 _2547 HP15_2548: HP15_2548 - xanthine/uracil permease family protein, at 2,694,502 to 2,695,800 _2548 Position (kb) 2693 2694 2695Strain fitness (log2 ratio) -2 -1 0 1at 2692.819 kb on + strandat 2692.883 kb on + strandat 2692.976 kb on + strandat 2692.979 kb on - strandat 2693.056 kb on + strand, within HP15_2546at 2693.155 kb on + strand, within HP15_2546at 2693.155 kb on + strand, within HP15_2546at 2693.162 kb on + strand, within HP15_2546at 2693.163 kb on - strand, within HP15_2546at 2693.163 kb on - strand, within HP15_2546at 2693.163 kb on - strand, within HP15_2546at 2693.163 kb on - strand, within HP15_2546at 2693.163 kb on - strand, within HP15_2546at 2693.163 kb on - strand, within HP15_2546at 2693.184 kb on - strand, within HP15_2546at 2693.527 kb on - strandat 2693.544 kb on + strandat 2693.628 kb on + strandat 2693.708 kb on + strandat 2693.866 kb on + strand, within HP15_2547at 2693.866 kb on + strand, within HP15_2547at 2693.996 kb on + strand, within HP15_2547at 2694.185 kb on - strand, within HP15_2547at 2694.359 kb on - strandat 2694.492 kb on + strandat 2694.534 kb on + strandat 2694.686 kb on - strand, within HP15_2548at 2694.789 kb on - strand, within HP15_2548at 2694.811 kb on + strand, within HP15_2548at 2694.819 kb on - strand, within HP15_2548at 2694.848 kb on + strand, within HP15_2548at 2694.856 kb on - strand, within HP15_2548at 2694.856 kb on - strand, within HP15_2548at 2694.927 kb on - strand, within HP15_2548at 2695.171 kb on + strand, within HP15_2548at 2695.257 kb on + strand, within HP15_2548at 2695.265 kb on - strand, within HP15_2548at 2695.291 kb on - strand, within HP15_2548

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.125 vol%
remove
2,692,819 + -0.1
2,692,883 + -0.4
2,692,976 + -0.6
2,692,979 - -0.1
2,693,056 + HP15_2546 0.15 -0.6
2,693,155 + HP15_2546 0.33 +0.6
2,693,155 + HP15_2546 0.33 -0.4
2,693,162 + HP15_2546 0.34 -0.2
2,693,163 - HP15_2546 0.34 +0.1
2,693,163 - HP15_2546 0.34 -0.3
2,693,163 - HP15_2546 0.34 -0.4
2,693,163 - HP15_2546 0.34 -0.2
2,693,163 - HP15_2546 0.34 +0.0
2,693,163 - HP15_2546 0.34 +0.3
2,693,184 - HP15_2546 0.38 -0.1
2,693,527 - -0.1
2,693,544 + +0.6
2,693,628 + -1.9
2,693,708 + -0.5
2,693,866 + HP15_2547 0.22 +0.3
2,693,866 + HP15_2547 0.22 +0.8
2,693,996 + HP15_2547 0.43 +0.0
2,694,185 - HP15_2547 0.73 +0.6
2,694,359 - +0.4
2,694,492 + -1.0
2,694,534 + -0.7
2,694,686 - HP15_2548 0.14 -0.6
2,694,789 - HP15_2548 0.22 -0.1
2,694,811 + HP15_2548 0.24 +1.0
2,694,819 - HP15_2548 0.24 -0.6
2,694,848 + HP15_2548 0.27 -0.8
2,694,856 - HP15_2548 0.27 +0.4
2,694,856 - HP15_2548 0.27 +1.0
2,694,927 - HP15_2548 0.33 -0.2
2,695,171 + HP15_2548 0.52 +0.4
2,695,257 + HP15_2548 0.58 -0.2
2,695,265 - HP15_2548 0.59 +1.5
2,695,291 - HP15_2548 0.61 -0.5

Or see this region's nucleotide sequence