Strain Fitness in Marinobacter adhaerens HP15 around HP15_1688

Experiment: m.b. Furfuryl Alcohol 0.125 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1687 and HP15_1688 are separated by 99 nucleotidesHP15_1688 and HP15_1689 overlap by 4 nucleotides HP15_1687: HP15_1687 - transcriptional regulator, GntR family with aminotransferase domain protein, at 1,771,993 to 1,773,435 _1687 HP15_1688: HP15_1688 - iron-sulfur cluster-binding protein, at 1,773,535 to 1,774,926 _1688 HP15_1689: HP15_1689 - sensory box/GGDEF family protein, at 1,774,923 to 1,776,980 _1689 Position (kb) 1773 1774 1775Strain fitness (log2 ratio) -2 -1 0 1 2at 1772.547 kb on + strand, within HP15_1687at 1772.594 kb on - strand, within HP15_1687at 1772.745 kb on - strand, within HP15_1687at 1772.883 kb on - strand, within HP15_1687at 1772.976 kb on + strand, within HP15_1687at 1773.060 kb on - strand, within HP15_1687at 1773.071 kb on + strand, within HP15_1687at 1773.079 kb on - strand, within HP15_1687at 1773.084 kb on - strand, within HP15_1687at 1773.214 kb on + strand, within HP15_1687at 1773.236 kb on + strand, within HP15_1687at 1773.244 kb on - strand, within HP15_1687at 1773.284 kb on - strand, within HP15_1687at 1773.417 kb on - strandat 1773.719 kb on + strand, within HP15_1688at 1773.791 kb on + strand, within HP15_1688at 1773.794 kb on - strand, within HP15_1688at 1773.799 kb on - strand, within HP15_1688at 1773.860 kb on + strand, within HP15_1688at 1774.141 kb on + strand, within HP15_1688at 1774.149 kb on - strand, within HP15_1688at 1774.156 kb on + strand, within HP15_1688at 1774.156 kb on + strand, within HP15_1688at 1774.221 kb on + strand, within HP15_1688at 1774.221 kb on + strand, within HP15_1688at 1774.266 kb on + strand, within HP15_1688at 1774.274 kb on - strand, within HP15_1688at 1774.281 kb on + strand, within HP15_1688at 1774.336 kb on - strand, within HP15_1688at 1774.340 kb on + strand, within HP15_1688at 1774.480 kb on - strand, within HP15_1688at 1774.496 kb on + strand, within HP15_1688at 1774.506 kb on + strand, within HP15_1688at 1774.569 kb on + strand, within HP15_1688at 1774.730 kb on - strand, within HP15_1688at 1774.744 kb on - strand, within HP15_1688at 1774.754 kb on - strand, within HP15_1688at 1774.955 kb on - strandat 1775.058 kb on + strandat 1775.066 kb on - strandat 1775.066 kb on - strandat 1775.106 kb on - strandat 1775.181 kb on - strand, within HP15_1689at 1775.286 kb on + strand, within HP15_1689at 1775.305 kb on - strand, within HP15_1689at 1775.354 kb on + strand, within HP15_1689at 1775.577 kb on - strand, within HP15_1689at 1775.597 kb on + strand, within HP15_1689at 1775.620 kb on - strand, within HP15_1689at 1775.653 kb on + strand, within HP15_1689at 1775.692 kb on + strand, within HP15_1689at 1775.713 kb on + strand, within HP15_1689at 1775.811 kb on - strand, within HP15_1689at 1775.813 kb on + strand, within HP15_1689at 1775.909 kb on - strand, within HP15_1689

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.125 vol%
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1,772,547 + HP15_1687 0.38 +0.8
1,772,594 - HP15_1687 0.42 +0.9
1,772,745 - HP15_1687 0.52 +0.6
1,772,883 - HP15_1687 0.62 +0.4
1,772,976 + HP15_1687 0.68 +1.2
1,773,060 - HP15_1687 0.74 +0.3
1,773,071 + HP15_1687 0.75 +2.1
1,773,079 - HP15_1687 0.75 -0.0
1,773,084 - HP15_1687 0.76 -1.0
1,773,214 + HP15_1687 0.85 -1.3
1,773,236 + HP15_1687 0.86 -0.5
1,773,244 - HP15_1687 0.87 +0.9
1,773,284 - HP15_1687 0.89 +0.2
1,773,417 - +0.5
1,773,719 + HP15_1688 0.13 -0.4
1,773,791 + HP15_1688 0.18 +0.4
1,773,794 - HP15_1688 0.19 -0.4
1,773,799 - HP15_1688 0.19 -0.0
1,773,860 + HP15_1688 0.23 -0.5
1,774,141 + HP15_1688 0.44 +0.2
1,774,149 - HP15_1688 0.44 +0.9
1,774,156 + HP15_1688 0.45 -2.4
1,774,156 + HP15_1688 0.45 -2.4
1,774,221 + HP15_1688 0.49 -1.7
1,774,221 + HP15_1688 0.49 -0.5
1,774,266 + HP15_1688 0.53 -0.0
1,774,274 - HP15_1688 0.53 +0.3
1,774,281 + HP15_1688 0.54 +2.7
1,774,336 - HP15_1688 0.58 +0.0
1,774,340 + HP15_1688 0.58 -0.9
1,774,480 - HP15_1688 0.68 -1.5
1,774,496 + HP15_1688 0.69 +0.1
1,774,506 + HP15_1688 0.70 -1.4
1,774,569 + HP15_1688 0.74 +0.1
1,774,730 - HP15_1688 0.86 +0.4
1,774,744 - HP15_1688 0.87 -1.1
1,774,754 - HP15_1688 0.88 -0.7
1,774,955 - -0.4
1,775,058 + +0.2
1,775,066 - +0.0
1,775,066 - -1.6
1,775,106 - +1.1
1,775,181 - HP15_1689 0.13 -0.1
1,775,286 + HP15_1689 0.18 -0.4
1,775,305 - HP15_1689 0.19 +0.8
1,775,354 + HP15_1689 0.21 -0.2
1,775,577 - HP15_1689 0.32 +0.1
1,775,597 + HP15_1689 0.33 +1.0
1,775,620 - HP15_1689 0.34 -0.2
1,775,653 + HP15_1689 0.35 -0.2
1,775,692 + HP15_1689 0.37 -0.7
1,775,713 + HP15_1689 0.38 +0.5
1,775,811 - HP15_1689 0.43 +0.3
1,775,813 + HP15_1689 0.43 -0.6
1,775,909 - HP15_1689 0.48 +0.3

Or see this region's nucleotide sequence