Experiment: m-Inositol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c14610 and PGA1_c14630 are separated by 239 nucleotides PGA1_c14630 and PGA1_c14640 are separated by 100 nucleotides PGA1_c14640 and PGA1_c14650 are separated by 239 nucleotides
PGA1_c14610: PGA1_c14610 - GMP synthase, at 1,516,128 to 1,517,696
_c14610
PGA1_c14630: PGA1_c14630 - trimethylamine methyltransferase MttB, at 1,517,936 to 1,519,489
_c14630
PGA1_c14640: PGA1_c14640 - hypothetical protein, at 1,519,590 to 1,519,886
_c14640
PGA1_c14650: PGA1_c14650 - hypothetical protein, at 1,520,126 to 1,521,199
_c14650
Position (kb)
1517
1518
1519
1520 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1517.794 kb on - strand at 1517.812 kb on - strand at 1517.868 kb on - strand at 1517.885 kb on - strand at 1517.975 kb on + strand at 1517.985 kb on - strand at 1518.005 kb on + strand at 1518.005 kb on + strand at 1518.005 kb on + strand at 1518.005 kb on + strand at 1518.005 kb on + strand at 1518.005 kb on + strand at 1518.005 kb on + strand at 1518.319 kb on + strand, within PGA1_c14630 at 1518.328 kb on + strand, within PGA1_c14630 at 1518.356 kb on + strand, within PGA1_c14630 at 1518.383 kb on - strand, within PGA1_c14630 at 1518.420 kb on - strand, within PGA1_c14630 at 1518.593 kb on - strand, within PGA1_c14630 at 1518.616 kb on + strand, within PGA1_c14630 at 1518.624 kb on - strand, within PGA1_c14630 at 1518.699 kb on + strand, within PGA1_c14630 at 1518.705 kb on + strand, within PGA1_c14630 at 1518.710 kb on + strand, within PGA1_c14630 at 1518.832 kb on - strand, within PGA1_c14630 at 1518.909 kb on + strand, within PGA1_c14630 at 1518.909 kb on + strand, within PGA1_c14630 at 1518.944 kb on - strand, within PGA1_c14630 at 1518.988 kb on + strand, within PGA1_c14630 at 1519.004 kb on - strand, within PGA1_c14630 at 1519.053 kb on - strand, within PGA1_c14630 at 1519.171 kb on + strand, within PGA1_c14630 at 1519.237 kb on - strand, within PGA1_c14630 at 1519.366 kb on - strand at 1519.403 kb on - strand at 1519.550 kb on + strand at 1519.622 kb on + strand, within PGA1_c14640 at 1519.764 kb on + strand, within PGA1_c14640 at 1519.849 kb on - strand, within PGA1_c14640 at 1519.849 kb on - strand, within PGA1_c14640 at 1519.873 kb on + strand at 1519.873 kb on + strand at 1519.888 kb on + strand at 1519.920 kb on + strand at 1519.920 kb on + strand at 1519.920 kb on + strand at 1519.928 kb on - strand at 1520.014 kb on - strand at 1520.014 kb on - strand at 1520.110 kb on + strand at 1520.110 kb on + strand at 1520.110 kb on + strand at 1520.110 kb on + strand at 1520.110 kb on + strand at 1520.110 kb on + strand at 1520.110 kb on + strand at 1520.110 kb on + strand at 1520.110 kb on + strand at 1520.110 kb on + strand at 1520.110 kb on + strand at 1520.110 kb on + strand at 1520.110 kb on + strand at 1520.110 kb on + strand at 1520.110 kb on + strand at 1520.110 kb on + strand at 1520.110 kb on + strand at 1520.110 kb on + strand at 1520.110 kb on + strand at 1520.110 kb on + strand at 1520.110 kb on + strand at 1520.110 kb on + strand at 1520.110 kb on + strand at 1520.110 kb on + strand at 1520.110 kb on + strand at 1520.118 kb on - strand at 1520.118 kb on - strand at 1520.118 kb on - strand at 1520.118 kb on - strand at 1520.118 kb on - strand at 1520.118 kb on - strand at 1520.118 kb on - strand at 1520.118 kb on - strand at 1520.118 kb on - strand at 1520.118 kb on - strand at 1520.118 kb on - strand at 1520.118 kb on - strand at 1520.118 kb on - strand at 1520.118 kb on - strand at 1520.118 kb on - strand at 1520.118 kb on - strand at 1520.118 kb on - strand at 1520.118 kb on - strand at 1520.118 kb on - strand at 1520.118 kb on - strand at 1520.118 kb on - strand at 1520.118 kb on - strand at 1520.141 kb on + strand at 1520.149 kb on - strand at 1520.192 kb on - strand at 1520.245 kb on + strand, within PGA1_c14650 at 1520.441 kb on + strand, within PGA1_c14650 at 1520.449 kb on - strand, within PGA1_c14650 at 1520.451 kb on + strand, within PGA1_c14650 at 1520.459 kb on - strand, within PGA1_c14650 at 1520.459 kb on - strand, within PGA1_c14650 at 1520.459 kb on - strand, within PGA1_c14650 at 1520.459 kb on - strand, within PGA1_c14650 at 1520.479 kb on - strand, within PGA1_c14650
Per-strain Table
Position Strand Gene LocusTag Fraction m-Inositol (C) remove 1,517,794 - -0.1 1,517,812 - -1.1 1,517,868 - -1.9 1,517,885 - -1.8 1,517,975 + -0.4 1,517,985 - +1.5 1,518,005 + -0.3 1,518,005 + +0.5 1,518,005 + +0.0 1,518,005 + -2.6 1,518,005 + -1.0 1,518,005 + -0.3 1,518,005 + +0.7 1,518,319 + PGA1_c14630 0.25 -1.0 1,518,328 + PGA1_c14630 0.25 +0.5 1,518,356 + PGA1_c14630 0.27 -2.6 1,518,383 - PGA1_c14630 0.29 -0.6 1,518,420 - PGA1_c14630 0.31 -0.6 1,518,593 - PGA1_c14630 0.42 -1.1 1,518,616 + PGA1_c14630 0.44 -0.6 1,518,624 - PGA1_c14630 0.44 +0.6 1,518,699 + PGA1_c14630 0.49 -0.9 1,518,705 + PGA1_c14630 0.49 -0.4 1,518,710 + PGA1_c14630 0.50 +0.8 1,518,832 - PGA1_c14630 0.58 -0.1 1,518,909 + PGA1_c14630 0.63 +0.4 1,518,909 + PGA1_c14630 0.63 -2.8 1,518,944 - PGA1_c14630 0.65 +0.0 1,518,988 + PGA1_c14630 0.68 -0.9 1,519,004 - PGA1_c14630 0.69 -0.8 1,519,053 - PGA1_c14630 0.72 -1.5 1,519,171 + PGA1_c14630 0.79 +0.1 1,519,237 - PGA1_c14630 0.84 -2.4 1,519,366 - -1.2 1,519,403 - +0.4 1,519,550 + +0.3 1,519,622 + PGA1_c14640 0.11 +0.5 1,519,764 + PGA1_c14640 0.59 -2.3 1,519,849 - PGA1_c14640 0.87 +1.4 1,519,849 - PGA1_c14640 0.87 +0.9 1,519,873 + +0.7 1,519,873 + -0.7 1,519,888 + +0.6 1,519,920 + +0.2 1,519,920 + +0.4 1,519,920 + +1.0 1,519,928 - +1.6 1,520,014 - -0.6 1,520,014 - -2.0 1,520,110 + -0.3 1,520,110 + +1.0 1,520,110 + +0.8 1,520,110 + -0.4 1,520,110 + +2.1 1,520,110 + -1.1 1,520,110 + +1.0 1,520,110 + +1.8 1,520,110 + -0.1 1,520,110 + +1.2 1,520,110 + -0.8 1,520,110 + +0.3 1,520,110 + +0.6 1,520,110 + -0.3 1,520,110 + +0.7 1,520,110 + -0.6 1,520,110 + -0.3 1,520,110 + -0.5 1,520,110 + +2.0 1,520,110 + +1.7 1,520,110 + +0.7 1,520,110 + +1.3 1,520,110 + -0.3 1,520,110 + +0.9 1,520,110 + +0.6 1,520,118 - +0.8 1,520,118 - +0.2 1,520,118 - -1.8 1,520,118 - -2.5 1,520,118 - +0.6 1,520,118 - -0.1 1,520,118 - +0.4 1,520,118 - -1.1 1,520,118 - -0.2 1,520,118 - -1.6 1,520,118 - +0.6 1,520,118 - -1.2 1,520,118 - -0.1 1,520,118 - -0.9 1,520,118 - +1.0 1,520,118 - -0.3 1,520,118 - +2.3 1,520,118 - +0.9 1,520,118 - -2.2 1,520,118 - +0.2 1,520,118 - -1.0 1,520,118 - -1.0 1,520,141 + -0.2 1,520,149 - +0.2 1,520,192 - -1.8 1,520,245 + PGA1_c14650 0.11 +0.3 1,520,441 + PGA1_c14650 0.29 -2.9 1,520,449 - PGA1_c14650 0.30 +0.4 1,520,451 + PGA1_c14650 0.30 +0.3 1,520,459 - PGA1_c14650 0.31 +0.8 1,520,459 - PGA1_c14650 0.31 -1.0 1,520,459 - PGA1_c14650 0.31 +0.4 1,520,459 - PGA1_c14650 0.31 -1.3 1,520,479 - PGA1_c14650 0.33 +0.4
Or see this region's nucleotide sequence