Strain Fitness in Marinobacter adhaerens HP15 around HP15_1108

Experiment: m.b. Furfuryl Alcohol 0.125 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1107 and HP15_1108 are separated by 10 nucleotidesHP15_1108 and HP15_1109 are separated by 364 nucleotidesHP15_1109 and HP15_1110 are separated by 56 nucleotides HP15_1107: HP15_1107 - oxidoreductase FAD/NAD(P)-binding domain protein, at 1,134,588 to 1,135,604 _1107 HP15_1108: HP15_1108 - 3-ketoacyl-(acyl-carrier-protein) reductase, at 1,135,615 to 1,136,400 _1108 HP15_1109: HP15_1109 - chloroplast-type ferredoxin-like protein, at 1,136,765 to 1,137,019 _1109 HP15_1110: HP15_1110 - catechol 2,3-dioxygenase, at 1,137,076 to 1,137,948 _1110 Position (kb) 1135 1136 1137Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1134.754 kb on + strand, within HP15_1107at 1134.789 kb on + strand, within HP15_1107at 1134.797 kb on + strand, within HP15_1107at 1134.797 kb on + strand, within HP15_1107at 1134.805 kb on - strand, within HP15_1107at 1134.805 kb on - strand, within HP15_1107at 1134.871 kb on - strand, within HP15_1107at 1134.935 kb on + strand, within HP15_1107at 1134.945 kb on + strand, within HP15_1107at 1134.945 kb on + strand, within HP15_1107at 1134.953 kb on - strand, within HP15_1107at 1135.020 kb on - strand, within HP15_1107at 1135.030 kb on - strand, within HP15_1107at 1135.040 kb on - strand, within HP15_1107at 1135.040 kb on - strand, within HP15_1107at 1135.057 kb on - strand, within HP15_1107at 1135.065 kb on - strand, within HP15_1107at 1135.089 kb on - strand, within HP15_1107at 1135.089 kb on - strand, within HP15_1107at 1135.089 kb on - strand, within HP15_1107at 1135.116 kb on + strand, within HP15_1107at 1135.140 kb on + strand, within HP15_1107at 1135.148 kb on - strand, within HP15_1107at 1135.148 kb on - strand, within HP15_1107at 1135.162 kb on + strand, within HP15_1107at 1135.189 kb on + strand, within HP15_1107at 1135.197 kb on - strand, within HP15_1107at 1135.212 kb on - strand, within HP15_1107at 1135.253 kb on + strand, within HP15_1107at 1135.345 kb on + strand, within HP15_1107at 1135.355 kb on + strand, within HP15_1107at 1135.363 kb on - strand, within HP15_1107at 1135.363 kb on - strand, within HP15_1107at 1135.416 kb on + strand, within HP15_1107at 1135.537 kb on + strandat 1135.609 kb on + strandat 1135.651 kb on - strandat 1135.663 kb on + strandat 1135.668 kb on + strandat 1135.733 kb on + strand, within HP15_1108at 1135.789 kb on + strand, within HP15_1108at 1135.789 kb on + strand, within HP15_1108at 1135.816 kb on - strand, within HP15_1108at 1135.818 kb on + strand, within HP15_1108at 1135.915 kb on - strand, within HP15_1108at 1135.915 kb on - strand, within HP15_1108at 1135.917 kb on - strand, within HP15_1108at 1135.988 kb on - strand, within HP15_1108at 1136.017 kb on + strand, within HP15_1108at 1136.072 kb on - strand, within HP15_1108at 1136.106 kb on + strand, within HP15_1108at 1136.255 kb on + strand, within HP15_1108at 1136.275 kb on - strand, within HP15_1108at 1136.280 kb on - strand, within HP15_1108at 1136.313 kb on + strand, within HP15_1108at 1136.336 kb on + strandat 1136.336 kb on + strandat 1136.532 kb on + strandat 1136.540 kb on - strandat 1136.540 kb on - strandat 1136.540 kb on - strandat 1136.566 kb on - strandat 1136.585 kb on - strandat 1136.671 kb on + strandat 1136.755 kb on + strandat 1136.776 kb on - strandat 1136.785 kb on - strandat 1136.793 kb on - strand, within HP15_1109at 1136.885 kb on + strand, within HP15_1109at 1136.920 kb on - strand, within HP15_1109at 1136.920 kb on - strand, within HP15_1109at 1137.027 kb on + strandat 1137.087 kb on - strandat 1137.096 kb on + strandat 1137.096 kb on - strandat 1137.101 kb on - strandat 1137.125 kb on - strandat 1137.141 kb on + strandat 1137.144 kb on - strandat 1137.144 kb on - strandat 1137.144 kb on - strandat 1137.149 kb on - strandat 1137.149 kb on - strandat 1137.160 kb on - strandat 1137.185 kb on + strand, within HP15_1110at 1137.304 kb on - strand, within HP15_1110at 1137.321 kb on + strand, within HP15_1110at 1137.396 kb on + strand, within HP15_1110

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.125 vol%
remove
1,134,754 + HP15_1107 0.16 +0.1
1,134,789 + HP15_1107 0.20 +0.2
1,134,797 + HP15_1107 0.21 -0.3
1,134,797 + HP15_1107 0.21 +0.9
1,134,805 - HP15_1107 0.21 +0.4
1,134,805 - HP15_1107 0.21 -0.0
1,134,871 - HP15_1107 0.28 -0.0
1,134,935 + HP15_1107 0.34 +0.4
1,134,945 + HP15_1107 0.35 -0.3
1,134,945 + HP15_1107 0.35 +0.2
1,134,953 - HP15_1107 0.36 -0.0
1,135,020 - HP15_1107 0.42 +1.3
1,135,030 - HP15_1107 0.43 +0.0
1,135,040 - HP15_1107 0.44 -0.6
1,135,040 - HP15_1107 0.44 +0.8
1,135,057 - HP15_1107 0.46 +0.8
1,135,065 - HP15_1107 0.47 -1.0
1,135,089 - HP15_1107 0.49 -0.0
1,135,089 - HP15_1107 0.49 -0.2
1,135,089 - HP15_1107 0.49 +0.0
1,135,116 + HP15_1107 0.52 -1.1
1,135,140 + HP15_1107 0.54 -1.0
1,135,148 - HP15_1107 0.55 +0.4
1,135,148 - HP15_1107 0.55 +0.3
1,135,162 + HP15_1107 0.56 -0.5
1,135,189 + HP15_1107 0.59 -0.6
1,135,197 - HP15_1107 0.60 +0.3
1,135,212 - HP15_1107 0.61 -0.0
1,135,253 + HP15_1107 0.65 +1.3
1,135,345 + HP15_1107 0.74 +0.3
1,135,355 + HP15_1107 0.75 +0.4
1,135,363 - HP15_1107 0.76 +0.7
1,135,363 - HP15_1107 0.76 +0.3
1,135,416 + HP15_1107 0.81 +0.5
1,135,537 + -0.7
1,135,609 + +2.0
1,135,651 - -1.6
1,135,663 + -0.3
1,135,668 + +2.1
1,135,733 + HP15_1108 0.15 +1.5
1,135,789 + HP15_1108 0.22 -0.1
1,135,789 + HP15_1108 0.22 -0.2
1,135,816 - HP15_1108 0.26 +1.7
1,135,818 + HP15_1108 0.26 +0.2
1,135,915 - HP15_1108 0.38 +1.1
1,135,915 - HP15_1108 0.38 -0.2
1,135,917 - HP15_1108 0.38 +0.6
1,135,988 - HP15_1108 0.47 +2.8
1,136,017 + HP15_1108 0.51 +0.4
1,136,072 - HP15_1108 0.58 +0.0
1,136,106 + HP15_1108 0.62 +0.2
1,136,255 + HP15_1108 0.81 +0.1
1,136,275 - HP15_1108 0.84 +1.5
1,136,280 - HP15_1108 0.85 +0.9
1,136,313 + HP15_1108 0.89 +0.4
1,136,336 + +1.0
1,136,336 + +0.2
1,136,532 + -0.7
1,136,540 - +0.4
1,136,540 - +0.1
1,136,540 - +0.5
1,136,566 - -0.3
1,136,585 - +1.1
1,136,671 + -0.5
1,136,755 + -0.7
1,136,776 - -0.2
1,136,785 - -1.4
1,136,793 - HP15_1109 0.11 -0.2
1,136,885 + HP15_1109 0.47 +0.3
1,136,920 - HP15_1109 0.61 +1.5
1,136,920 - HP15_1109 0.61 +1.4
1,137,027 + +0.2
1,137,087 - -0.6
1,137,096 + +0.1
1,137,096 - +1.8
1,137,101 - -0.6
1,137,125 - +0.5
1,137,141 + +0.5
1,137,144 - +0.0
1,137,144 - -2.0
1,137,144 - -0.0
1,137,149 - -0.3
1,137,149 - -0.0
1,137,160 - +0.1
1,137,185 + HP15_1110 0.12 +0.2
1,137,304 - HP15_1110 0.26 -2.6
1,137,321 + HP15_1110 0.28 +0.9
1,137,396 + HP15_1110 0.37 -0.8

Or see this region's nucleotide sequence