Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4149

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4148 and Dshi_4149 are separated by 265 nucleotidesDshi_4149 and Dshi_4150 overlap by 4 nucleotides Dshi_4148: Dshi_4148 - ABC-2 type transporter (RefSeq), at 80,815 to 81,660 _4148 Dshi_4149: Dshi_4149 - transferase hexapeptide repeat containing protein (RefSeq), at 81,926 to 82,657 _4149 Dshi_4150: Dshi_4150 - hypothetical protein (RefSeq), at 82,654 to 83,457 _4150 Position (kb) 81 82 83Strain fitness (log2 ratio) -2 -1 0 1 2at 80.969 kb on - strand, within Dshi_4148at 81.116 kb on - strand, within Dshi_4148at 81.174 kb on + strand, within Dshi_4148at 81.182 kb on - strand, within Dshi_4148at 81.190 kb on - strand, within Dshi_4148at 81.243 kb on + strand, within Dshi_4148at 81.322 kb on + strand, within Dshi_4148at 81.477 kb on + strand, within Dshi_4148at 81.623 kb on - strandat 81.641 kb on + strandat 81.641 kb on + strandat 81.709 kb on - strandat 81.740 kb on - strandat 81.819 kb on - strandat 81.949 kb on - strandat 81.982 kb on + strandat 82.021 kb on - strand, within Dshi_4149at 82.034 kb on + strand, within Dshi_4149at 82.099 kb on + strand, within Dshi_4149at 82.108 kb on - strand, within Dshi_4149at 82.164 kb on - strand, within Dshi_4149at 82.193 kb on + strand, within Dshi_4149at 82.201 kb on - strand, within Dshi_4149at 82.306 kb on - strand, within Dshi_4149at 82.308 kb on - strand, within Dshi_4149at 82.315 kb on + strand, within Dshi_4149at 82.417 kb on + strand, within Dshi_4149at 82.520 kb on + strand, within Dshi_4149at 82.574 kb on + strand, within Dshi_4149at 82.582 kb on - strand, within Dshi_4149at 82.582 kb on - strand, within Dshi_4149at 82.769 kb on - strand, within Dshi_4150at 82.793 kb on - strand, within Dshi_4150at 82.887 kb on - strand, within Dshi_4150at 82.928 kb on + strand, within Dshi_4150at 83.015 kb on + strand, within Dshi_4150at 83.464 kb on - strandat 83.466 kb on + strandat 83.506 kb on - strandat 83.506 kb on - strandat 83.527 kb on - strandat 83.587 kb on - strandat 83.587 kb on - strandat 83.640 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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80,969 - Dshi_4148 0.18 +1.1
81,116 - Dshi_4148 0.36 +1.3
81,174 + Dshi_4148 0.42 -0.2
81,182 - Dshi_4148 0.43 +1.1
81,190 - Dshi_4148 0.44 +0.5
81,243 + Dshi_4148 0.51 -0.0
81,322 + Dshi_4148 0.60 +1.2
81,477 + Dshi_4148 0.78 +1.8
81,623 - +1.0
81,641 + +0.7
81,641 + +0.5
81,709 - +0.8
81,740 - -0.6
81,819 - +0.1
81,949 - +1.2
81,982 + +1.6
82,021 - Dshi_4149 0.13 +1.5
82,034 + Dshi_4149 0.15 +0.7
82,099 + Dshi_4149 0.24 +1.5
82,108 - Dshi_4149 0.25 +1.6
82,164 - Dshi_4149 0.33 +0.7
82,193 + Dshi_4149 0.36 +1.2
82,201 - Dshi_4149 0.38 +0.8
82,306 - Dshi_4149 0.52 +0.8
82,308 - Dshi_4149 0.52 +1.5
82,315 + Dshi_4149 0.53 +1.7
82,417 + Dshi_4149 0.67 +0.7
82,520 + Dshi_4149 0.81 +1.3
82,574 + Dshi_4149 0.89 +0.9
82,582 - Dshi_4149 0.90 +1.4
82,582 - Dshi_4149 0.90 +1.5
82,769 - Dshi_4150 0.14 +0.7
82,793 - Dshi_4150 0.17 +1.1
82,887 - Dshi_4150 0.29 +1.4
82,928 + Dshi_4150 0.34 +0.3
83,015 + Dshi_4150 0.45 +1.6
83,464 - -0.1
83,466 + -0.8
83,506 - -2.3
83,506 - -0.6
83,527 - +0.3
83,587 - +0.9
83,587 - +0.1
83,640 - -0.0

Or see this region's nucleotide sequence