Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3151

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3149 and Dshi_3150 are separated by 104 nucleotidesDshi_3150 and Dshi_3151 are separated by 40 nucleotidesDshi_3151 and Dshi_3152 are separated by 45 nucleotidesDshi_3152 and Dshi_3153 overlap by 17 nucleotides Dshi_3149: Dshi_3149 - peptidase M15D vanX D-ala-D-ala dipeptidase (RefSeq), at 3,315,173 to 3,315,985 _3149 Dshi_3150: Dshi_3150 - aminotransferase class IV (RefSeq), at 3,316,090 to 3,316,944 _3150 Dshi_3151: Dshi_3151 - transcriptional regulator, LysR family (RefSeq), at 3,316,985 to 3,317,893 _3151 Dshi_3152: Dshi_3152 - protein of unknown function DUF1445 (RefSeq), at 3,317,939 to 3,318,841 _3152 Dshi_3153: Dshi_3153 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 3,318,825 to 3,319,859 _3153 Position (kb) 3316 3317 3318Strain fitness (log2 ratio) -2 -1 0 1at 3316.052 kb on + strandat 3316.085 kb on + strandat 3316.185 kb on - strand, within Dshi_3150at 3316.190 kb on - strand, within Dshi_3150at 3316.244 kb on + strand, within Dshi_3150at 3316.245 kb on + strand, within Dshi_3150at 3316.260 kb on + strand, within Dshi_3150at 3316.316 kb on - strand, within Dshi_3150at 3316.347 kb on - strand, within Dshi_3150at 3316.358 kb on + strand, within Dshi_3150at 3316.408 kb on - strand, within Dshi_3150at 3316.440 kb on + strand, within Dshi_3150at 3316.440 kb on + strand, within Dshi_3150at 3316.448 kb on - strand, within Dshi_3150at 3316.577 kb on - strand, within Dshi_3150at 3316.596 kb on - strand, within Dshi_3150at 3316.677 kb on - strand, within Dshi_3150at 3316.969 kb on - strandat 3317.142 kb on - strand, within Dshi_3151at 3317.166 kb on + strand, within Dshi_3151at 3317.210 kb on - strand, within Dshi_3151at 3317.222 kb on - strand, within Dshi_3151at 3317.341 kb on + strand, within Dshi_3151at 3317.346 kb on + strand, within Dshi_3151at 3317.352 kb on + strand, within Dshi_3151at 3317.495 kb on - strand, within Dshi_3151at 3317.581 kb on + strand, within Dshi_3151at 3317.623 kb on + strand, within Dshi_3151at 3317.713 kb on - strand, within Dshi_3151at 3317.713 kb on - strand, within Dshi_3151at 3317.816 kb on + strandat 3317.840 kb on + strandat 3317.846 kb on + strandat 3317.941 kb on + strandat 3317.990 kb on - strandat 3318.041 kb on + strandat 3318.041 kb on + strand, within Dshi_3152at 3318.049 kb on - strand, within Dshi_3152at 3318.049 kb on - strand, within Dshi_3152at 3318.120 kb on - strand, within Dshi_3152at 3318.194 kb on - strand, within Dshi_3152at 3318.238 kb on - strand, within Dshi_3152at 3318.253 kb on - strand, within Dshi_3152at 3318.301 kb on + strand, within Dshi_3152at 3318.317 kb on + strand, within Dshi_3152at 3318.370 kb on + strand, within Dshi_3152at 3318.442 kb on + strand, within Dshi_3152at 3318.578 kb on + strand, within Dshi_3152at 3318.704 kb on - strand, within Dshi_3152at 3318.808 kb on - strandat 3318.878 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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3,316,052 + +0.4
3,316,085 + -1.5
3,316,185 - Dshi_3150 0.11 -0.5
3,316,190 - Dshi_3150 0.12 -0.2
3,316,244 + Dshi_3150 0.18 +0.5
3,316,245 + Dshi_3150 0.18 -0.8
3,316,260 + Dshi_3150 0.20 -0.6
3,316,316 - Dshi_3150 0.26 -0.4
3,316,347 - Dshi_3150 0.30 -1.5
3,316,358 + Dshi_3150 0.31 -2.5
3,316,408 - Dshi_3150 0.37 -1.0
3,316,440 + Dshi_3150 0.41 +0.6
3,316,440 + Dshi_3150 0.41 -0.7
3,316,448 - Dshi_3150 0.42 -0.3
3,316,577 - Dshi_3150 0.57 -0.7
3,316,596 - Dshi_3150 0.59 -0.4
3,316,677 - Dshi_3150 0.69 +0.8
3,316,969 - +0.6
3,317,142 - Dshi_3151 0.17 -0.7
3,317,166 + Dshi_3151 0.20 +0.0
3,317,210 - Dshi_3151 0.25 -0.8
3,317,222 - Dshi_3151 0.26 -0.1
3,317,341 + Dshi_3151 0.39 +0.5
3,317,346 + Dshi_3151 0.40 +0.1
3,317,352 + Dshi_3151 0.40 -0.6
3,317,495 - Dshi_3151 0.56 -0.3
3,317,581 + Dshi_3151 0.66 -0.7
3,317,623 + Dshi_3151 0.70 -0.2
3,317,713 - Dshi_3151 0.80 -0.4
3,317,713 - Dshi_3151 0.80 -0.6
3,317,816 + -0.2
3,317,840 + +0.0
3,317,846 + -0.8
3,317,941 + -0.1
3,317,990 - -0.6
3,318,041 + +1.7
3,318,041 + Dshi_3152 0.11 -0.8
3,318,049 - Dshi_3152 0.12 +0.6
3,318,049 - Dshi_3152 0.12 +1.3
3,318,120 - Dshi_3152 0.20 -0.3
3,318,194 - Dshi_3152 0.28 -0.1
3,318,238 - Dshi_3152 0.33 -0.1
3,318,253 - Dshi_3152 0.35 -0.8
3,318,301 + Dshi_3152 0.40 -0.1
3,318,317 + Dshi_3152 0.42 -0.1
3,318,370 + Dshi_3152 0.48 -0.4
3,318,442 + Dshi_3152 0.56 -0.8
3,318,578 + Dshi_3152 0.71 +0.3
3,318,704 - Dshi_3152 0.85 -0.5
3,318,808 - -0.5
3,318,878 - +0.1

Or see this region's nucleotide sequence