Experiment: Glycerol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3149 and Dshi_3150 are separated by 104 nucleotides Dshi_3150 and Dshi_3151 are separated by 40 nucleotides Dshi_3151 and Dshi_3152 are separated by 45 nucleotides Dshi_3152 and Dshi_3153 overlap by 17 nucleotides
Dshi_3149: Dshi_3149 - peptidase M15D vanX D-ala-D-ala dipeptidase (RefSeq), at 3,315,173 to 3,315,985
_3149
Dshi_3150: Dshi_3150 - aminotransferase class IV (RefSeq), at 3,316,090 to 3,316,944
_3150
Dshi_3151: Dshi_3151 - transcriptional regulator, LysR family (RefSeq), at 3,316,985 to 3,317,893
_3151
Dshi_3152: Dshi_3152 - protein of unknown function DUF1445 (RefSeq), at 3,317,939 to 3,318,841
_3152
Dshi_3153: Dshi_3153 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 3,318,825 to 3,319,859
_3153
Position (kb)
3316
3317
3318 Strain fitness (log2 ratio)
-2
-1
0
1 at 3316.052 kb on + strand at 3316.085 kb on + strand at 3316.185 kb on - strand, within Dshi_3150 at 3316.190 kb on - strand, within Dshi_3150 at 3316.244 kb on + strand, within Dshi_3150 at 3316.245 kb on + strand, within Dshi_3150 at 3316.260 kb on + strand, within Dshi_3150 at 3316.316 kb on - strand, within Dshi_3150 at 3316.347 kb on - strand, within Dshi_3150 at 3316.358 kb on + strand, within Dshi_3150 at 3316.408 kb on - strand, within Dshi_3150 at 3316.440 kb on + strand, within Dshi_3150 at 3316.440 kb on + strand, within Dshi_3150 at 3316.448 kb on - strand, within Dshi_3150 at 3316.577 kb on - strand, within Dshi_3150 at 3316.596 kb on - strand, within Dshi_3150 at 3316.677 kb on - strand, within Dshi_3150 at 3316.969 kb on - strand at 3317.142 kb on - strand, within Dshi_3151 at 3317.166 kb on + strand, within Dshi_3151 at 3317.210 kb on - strand, within Dshi_3151 at 3317.222 kb on - strand, within Dshi_3151 at 3317.341 kb on + strand, within Dshi_3151 at 3317.346 kb on + strand, within Dshi_3151 at 3317.352 kb on + strand, within Dshi_3151 at 3317.495 kb on - strand, within Dshi_3151 at 3317.581 kb on + strand, within Dshi_3151 at 3317.623 kb on + strand, within Dshi_3151 at 3317.713 kb on - strand, within Dshi_3151 at 3317.713 kb on - strand, within Dshi_3151 at 3317.816 kb on + strand at 3317.840 kb on + strand at 3317.846 kb on + strand at 3317.941 kb on + strand at 3317.990 kb on - strand at 3318.041 kb on + strand at 3318.041 kb on + strand, within Dshi_3152 at 3318.049 kb on - strand, within Dshi_3152 at 3318.049 kb on - strand, within Dshi_3152 at 3318.120 kb on - strand, within Dshi_3152 at 3318.194 kb on - strand, within Dshi_3152 at 3318.238 kb on - strand, within Dshi_3152 at 3318.253 kb on - strand, within Dshi_3152 at 3318.301 kb on + strand, within Dshi_3152 at 3318.317 kb on + strand, within Dshi_3152 at 3318.370 kb on + strand, within Dshi_3152 at 3318.442 kb on + strand, within Dshi_3152 at 3318.578 kb on + strand, within Dshi_3152 at 3318.704 kb on - strand, within Dshi_3152 at 3318.808 kb on - strand at 3318.878 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol (C) remove 3,316,052 + +0.4 3,316,085 + -1.5 3,316,185 - Dshi_3150 0.11 -0.5 3,316,190 - Dshi_3150 0.12 -0.2 3,316,244 + Dshi_3150 0.18 +0.5 3,316,245 + Dshi_3150 0.18 -0.8 3,316,260 + Dshi_3150 0.20 -0.6 3,316,316 - Dshi_3150 0.26 -0.4 3,316,347 - Dshi_3150 0.30 -1.5 3,316,358 + Dshi_3150 0.31 -2.5 3,316,408 - Dshi_3150 0.37 -1.0 3,316,440 + Dshi_3150 0.41 +0.6 3,316,440 + Dshi_3150 0.41 -0.7 3,316,448 - Dshi_3150 0.42 -0.3 3,316,577 - Dshi_3150 0.57 -0.7 3,316,596 - Dshi_3150 0.59 -0.4 3,316,677 - Dshi_3150 0.69 +0.8 3,316,969 - +0.6 3,317,142 - Dshi_3151 0.17 -0.7 3,317,166 + Dshi_3151 0.20 +0.0 3,317,210 - Dshi_3151 0.25 -0.8 3,317,222 - Dshi_3151 0.26 -0.1 3,317,341 + Dshi_3151 0.39 +0.5 3,317,346 + Dshi_3151 0.40 +0.1 3,317,352 + Dshi_3151 0.40 -0.6 3,317,495 - Dshi_3151 0.56 -0.3 3,317,581 + Dshi_3151 0.66 -0.7 3,317,623 + Dshi_3151 0.70 -0.2 3,317,713 - Dshi_3151 0.80 -0.4 3,317,713 - Dshi_3151 0.80 -0.6 3,317,816 + -0.2 3,317,840 + +0.0 3,317,846 + -0.8 3,317,941 + -0.1 3,317,990 - -0.6 3,318,041 + +1.7 3,318,041 + Dshi_3152 0.11 -0.8 3,318,049 - Dshi_3152 0.12 +0.6 3,318,049 - Dshi_3152 0.12 +1.3 3,318,120 - Dshi_3152 0.20 -0.3 3,318,194 - Dshi_3152 0.28 -0.1 3,318,238 - Dshi_3152 0.33 -0.1 3,318,253 - Dshi_3152 0.35 -0.8 3,318,301 + Dshi_3152 0.40 -0.1 3,318,317 + Dshi_3152 0.42 -0.1 3,318,370 + Dshi_3152 0.48 -0.4 3,318,442 + Dshi_3152 0.56 -0.8 3,318,578 + Dshi_3152 0.71 +0.3 3,318,704 - Dshi_3152 0.85 -0.5 3,318,808 - -0.5 3,318,878 - +0.1
Or see this region's nucleotide sequence