Experiment: Glycerol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1106 and Dshi_1107 overlap by 4 nucleotides Dshi_1107 and Dshi_1108 are separated by 95 nucleotides Dshi_1108 and Dshi_1109 are separated by 87 nucleotides Dshi_1109 and Dshi_1110 are separated by 7 nucleotides
Dshi_1106: Dshi_1106 - hypothetical protein (RefSeq), at 1,132,304 to 1,132,930
_1106
Dshi_1107: Dshi_1107 - Pol-Pal system-associated acyl-CoA thioesterase (RefSeq), at 1,132,927 to 1,133,337
_1107
Dshi_1108: Dshi_1108 - Tol-Pal system TolQ (RefSeq), at 1,133,433 to 1,134,107
_1108
Dshi_1109: Dshi_1109 - Biopolymer transport TolR (RefSeq), at 1,134,195 to 1,134,599
_1109
Dshi_1110: Dshi_1110 - hypothetical protein (RefSeq), at 1,134,607 to 1,135,662
_1110
Position (kb)
1133
1134
1135 Strain fitness (log2 ratio)
-2
-1
0
1 at 1132.594 kb on + strand, within Dshi_1106 at 1132.770 kb on + strand, within Dshi_1106 at 1132.798 kb on + strand, within Dshi_1106 at 1133.018 kb on + strand, within Dshi_1107 at 1133.038 kb on - strand, within Dshi_1107 at 1133.091 kb on - strand, within Dshi_1107 at 1133.148 kb on + strand, within Dshi_1107 at 1133.219 kb on + strand, within Dshi_1107 at 1133.278 kb on - strand, within Dshi_1107 at 1133.316 kb on - strand at 1133.422 kb on - strand at 1133.432 kb on - strand at 1134.602 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol (C) remove 1,132,594 + Dshi_1106 0.46 -0.7 1,132,770 + Dshi_1106 0.74 -1.4 1,132,798 + Dshi_1106 0.79 -0.5 1,133,018 + Dshi_1107 0.22 -0.2 1,133,038 - Dshi_1107 0.27 +0.2 1,133,091 - Dshi_1107 0.40 +1.3 1,133,148 + Dshi_1107 0.54 +0.3 1,133,219 + Dshi_1107 0.71 +1.3 1,133,278 - Dshi_1107 0.85 +0.2 1,133,316 - -0.1 1,133,422 - -2.6 1,133,432 - -0.6 1,134,602 - -0.4
Or see this region's nucleotide sequence