Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0975

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0974 and Dshi_0975 are separated by 114 nucleotidesDshi_0975 and Dshi_0976 are separated by 217 nucleotidesDshi_0976 and Dshi_R0022 are separated by 197 nucleotides Dshi_0974: Dshi_0974 - extracellular solute-binding protein family 1 (RefSeq), at 995,276 to 996,583 _0974 Dshi_0975: Dshi_0975 - transcriptional regulator, LacI family (RefSeq), at 996,698 to 997,732 _0975 Dshi_0976: Dshi_0976 - resolvase-like protein (RefSeq), at 997,950 to 998,168 _0976 Dshi_R0022: Dshi_R0022 - tRNA-Thr (RefSeq), at 998,366 to 998,440 _R0022 Position (kb) 996 997 998Strain fitness (log2 ratio) -3 -2 -1 0 1at 995.820 kb on + strand, within Dshi_0974at 995.828 kb on - strand, within Dshi_0974at 995.851 kb on + strand, within Dshi_0974at 995.952 kb on + strand, within Dshi_0974at 995.970 kb on - strand, within Dshi_0974at 995.977 kb on + strand, within Dshi_0974at 995.977 kb on + strand, within Dshi_0974at 996.201 kb on - strand, within Dshi_0974at 996.201 kb on - strand, within Dshi_0974at 996.206 kb on - strand, within Dshi_0974at 996.226 kb on - strand, within Dshi_0974at 996.255 kb on + strand, within Dshi_0974at 996.294 kb on - strand, within Dshi_0974at 996.438 kb on - strand, within Dshi_0974at 996.550 kb on - strandat 996.550 kb on - strandat 996.625 kb on + strandat 996.777 kb on - strandat 996.836 kb on + strand, within Dshi_0975at 996.844 kb on + strand, within Dshi_0975at 996.872 kb on + strand, within Dshi_0975at 996.910 kb on - strand, within Dshi_0975at 997.080 kb on + strand, within Dshi_0975at 997.114 kb on + strand, within Dshi_0975at 997.231 kb on - strand, within Dshi_0975at 997.431 kb on - strand, within Dshi_0975at 997.521 kb on - strand, within Dshi_0975at 997.597 kb on - strand, within Dshi_0975at 997.805 kb on + strandat 997.846 kb on + strandat 997.847 kb on + strandat 997.855 kb on - strandat 997.857 kb on + strandat 997.865 kb on - strandat 997.865 kb on - strandat 997.875 kb on - strandat 997.960 kb on + strandat 997.995 kb on - strand, within Dshi_0976at 998.019 kb on + strand, within Dshi_0976at 998.089 kb on + strand, within Dshi_0976at 998.231 kb on + strandat 998.231 kb on + strandat 998.256 kb on - strandat 998.282 kb on - strandat 998.305 kb on - strandat 998.534 kb on - strandat 998.535 kb on - strandat 998.535 kb on - strandat 998.535 kb on - strandat 998.546 kb on - strandat 998.590 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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995,820 + Dshi_0974 0.42 -0.9
995,828 - Dshi_0974 0.42 -1.4
995,851 + Dshi_0974 0.44 -1.6
995,952 + Dshi_0974 0.52 -0.9
995,970 - Dshi_0974 0.53 -0.4
995,977 + Dshi_0974 0.54 -1.9
995,977 + Dshi_0974 0.54 -0.4
996,201 - Dshi_0974 0.71 +0.9
996,201 - Dshi_0974 0.71 -0.3
996,206 - Dshi_0974 0.71 -0.1
996,226 - Dshi_0974 0.73 -0.1
996,255 + Dshi_0974 0.75 -0.0
996,294 - Dshi_0974 0.78 +0.9
996,438 - Dshi_0974 0.89 -0.0
996,550 - -0.3
996,550 - -0.9
996,625 + -0.7
996,777 - -1.2
996,836 + Dshi_0975 0.13 -1.2
996,844 + Dshi_0975 0.14 -2.0
996,872 + Dshi_0975 0.17 -2.0
996,910 - Dshi_0975 0.20 -1.4
997,080 + Dshi_0975 0.37 -1.5
997,114 + Dshi_0975 0.40 -2.0
997,231 - Dshi_0975 0.51 -2.5
997,431 - Dshi_0975 0.71 -2.7
997,521 - Dshi_0975 0.80 -0.5
997,597 - Dshi_0975 0.87 -3.2
997,805 + -0.3
997,846 + -0.6
997,847 + -0.7
997,855 - -1.7
997,857 + +0.1
997,865 - -0.1
997,865 - +0.4
997,875 - -0.1
997,960 + +0.2
997,995 - Dshi_0976 0.21 -0.1
998,019 + Dshi_0976 0.32 -1.0
998,089 + Dshi_0976 0.63 +0.5
998,231 + -0.3
998,231 + +1.1
998,256 - -0.0
998,282 - -0.3
998,305 - -0.7
998,534 - +0.1
998,535 - +0.4
998,535 - -0.6
998,535 - -0.7
998,546 - -0.4
998,590 - +0.7

Or see this region's nucleotide sequence