Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0679

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0678 and Dshi_0679 are separated by 8 nucleotidesDshi_0679 and Dshi_0680 are separated by 119 nucleotides Dshi_0678: Dshi_0678 - glycosyl transferase family 14 (RefSeq), at 684,684 to 686,261 _0678 Dshi_0679: Dshi_0679 - histidine triad (HIT) protein (RefSeq), at 686,270 to 686,641 _0679 Dshi_0680: Dshi_0680 - phosphoribosylaminoimidazole carboxylase, ATPase subunit (RefSeq), at 686,761 to 687,834 _0680 Position (kb) 686 687Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 685.296 kb on + strand, within Dshi_0678at 685.299 kb on - strand, within Dshi_0678at 685.359 kb on - strand, within Dshi_0678at 685.412 kb on - strand, within Dshi_0678at 685.685 kb on + strand, within Dshi_0678at 685.932 kb on + strand, within Dshi_0678at 686.194 kb on - strandat 686.275 kb on - strandat 686.277 kb on + strandat 686.407 kb on - strand, within Dshi_0679at 686.420 kb on + strand, within Dshi_0679at 686.533 kb on + strand, within Dshi_0679at 686.609 kb on + strandat 686.634 kb on - strandat 687.152 kb on - strand, within Dshi_0680

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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685,296 + Dshi_0678 0.39 +1.7
685,299 - Dshi_0678 0.39 -0.3
685,359 - Dshi_0678 0.43 -0.3
685,412 - Dshi_0678 0.46 -0.0
685,685 + Dshi_0678 0.63 +0.3
685,932 + Dshi_0678 0.79 -0.3
686,194 - +0.7
686,275 - +2.0
686,277 + -0.4
686,407 - Dshi_0679 0.37 -1.2
686,420 + Dshi_0679 0.40 -0.1
686,533 + Dshi_0679 0.71 +0.3
686,609 + -0.1
686,634 - -0.0
687,152 - Dshi_0680 0.36 -4.0

Or see this region's nucleotide sequence