Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0647

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0646 and Dshi_0647 are separated by 191 nucleotidesDshi_0647 and Dshi_0648 are separated by 149 nucleotidesDshi_0648 and Dshi_0649 are separated by 16 nucleotides Dshi_0646: Dshi_0646 - TRAP transporter, 4TM/12TM fusion protein (RefSeq), at 645,472 to 647,574 _0646 Dshi_0647: Dshi_0647 - hypothetical protein (RefSeq), at 647,766 to 650,513 _0647 Dshi_0648: Dshi_0648 - recombination protein RecR (RefSeq), at 650,663 to 651,262 _0648 Dshi_0649: Dshi_0649 - hypothetical protein (RefSeq), at 651,279 to 651,623 _0649 Position (kb) 647 648 649 650 651Strain fitness (log2 ratio) -1 0 1 2at 646.784 kb on + strand, within Dshi_0646at 646.835 kb on - strand, within Dshi_0646at 646.848 kb on - strand, within Dshi_0646at 646.925 kb on - strand, within Dshi_0646at 646.925 kb on - strand, within Dshi_0646at 647.343 kb on - strand, within Dshi_0646at 647.395 kb on + strandat 647.485 kb on + strandat 647.581 kb on + strandat 647.615 kb on - strandat 647.644 kb on + strandat 647.682 kb on + strandat 647.690 kb on - strandat 647.817 kb on + strandat 647.825 kb on - strandat 647.871 kb on - strandat 647.871 kb on - strandat 648.083 kb on - strand, within Dshi_0647at 648.219 kb on + strand, within Dshi_0647at 648.220 kb on - strand, within Dshi_0647at 648.230 kb on + strand, within Dshi_0647at 648.230 kb on + strand, within Dshi_0647at 648.287 kb on - strand, within Dshi_0647at 648.354 kb on - strand, within Dshi_0647at 648.356 kb on + strand, within Dshi_0647at 648.398 kb on + strand, within Dshi_0647at 648.461 kb on + strand, within Dshi_0647at 648.540 kb on + strand, within Dshi_0647at 648.720 kb on + strand, within Dshi_0647at 648.822 kb on - strand, within Dshi_0647at 648.851 kb on + strand, within Dshi_0647at 648.883 kb on - strand, within Dshi_0647at 648.908 kb on + strand, within Dshi_0647at 648.950 kb on - strand, within Dshi_0647at 648.983 kb on - strand, within Dshi_0647at 649.006 kb on + strand, within Dshi_0647at 649.063 kb on + strand, within Dshi_0647at 649.143 kb on - strand, within Dshi_0647at 649.166 kb on + strand, within Dshi_0647at 649.183 kb on + strand, within Dshi_0647at 649.279 kb on + strand, within Dshi_0647at 649.371 kb on + strand, within Dshi_0647at 649.378 kb on + strand, within Dshi_0647at 649.379 kb on - strand, within Dshi_0647at 649.389 kb on + strand, within Dshi_0647at 649.462 kb on - strand, within Dshi_0647at 649.480 kb on + strand, within Dshi_0647at 649.550 kb on + strand, within Dshi_0647at 649.569 kb on + strand, within Dshi_0647at 649.647 kb on + strand, within Dshi_0647at 649.769 kb on + strand, within Dshi_0647at 649.772 kb on - strand, within Dshi_0647at 649.784 kb on + strand, within Dshi_0647at 649.800 kb on - strand, within Dshi_0647at 649.810 kb on - strand, within Dshi_0647at 650.070 kb on + strand, within Dshi_0647at 650.079 kb on + strand, within Dshi_0647at 650.136 kb on + strand, within Dshi_0647at 650.136 kb on + strand, within Dshi_0647at 650.322 kb on + strandat 650.322 kb on + strandat 650.348 kb on + strandat 650.437 kb on - strandat 650.480 kb on - strandat 650.485 kb on - strandat 650.559 kb on - strandat 650.628 kb on + strandat 650.645 kb on + strandat 650.755 kb on - strand, within Dshi_0648at 651.022 kb on - strand, within Dshi_0648at 651.116 kb on + strand, within Dshi_0648at 651.128 kb on + strand, within Dshi_0648at 651.262 kb on + strandat 651.290 kb on + strandat 651.308 kb on + strandat 651.366 kb on - strand, within Dshi_0649at 651.366 kb on - strand, within Dshi_0649at 651.444 kb on + strand, within Dshi_0649at 651.481 kb on + strand, within Dshi_0649at 651.486 kb on + strand, within Dshi_0649at 651.489 kb on - strand, within Dshi_0649at 651.499 kb on - strand, within Dshi_0649at 651.499 kb on - strand, within Dshi_0649

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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646,784 + Dshi_0646 0.62 -1.4
646,835 - Dshi_0646 0.65 +0.1
646,848 - Dshi_0646 0.65 +0.6
646,925 - Dshi_0646 0.69 -0.3
646,925 - Dshi_0646 0.69 +0.1
647,343 - Dshi_0646 0.89 +0.2
647,395 + +0.0
647,485 + -0.3
647,581 + +1.4
647,615 - +0.8
647,644 + +0.4
647,682 + -0.3
647,690 - -1.5
647,817 + +0.3
647,825 - -0.0
647,871 - -0.6
647,871 - -0.4
648,083 - Dshi_0647 0.12 +0.5
648,219 + Dshi_0647 0.16 -0.1
648,220 - Dshi_0647 0.17 +1.2
648,230 + Dshi_0647 0.17 +1.2
648,230 + Dshi_0647 0.17 +0.7
648,287 - Dshi_0647 0.19 -0.4
648,354 - Dshi_0647 0.21 -0.3
648,356 + Dshi_0647 0.21 -0.4
648,398 + Dshi_0647 0.23 +0.6
648,461 + Dshi_0647 0.25 -0.9
648,540 + Dshi_0647 0.28 +0.2
648,720 + Dshi_0647 0.35 +0.2
648,822 - Dshi_0647 0.38 +2.6
648,851 + Dshi_0647 0.39 -0.4
648,883 - Dshi_0647 0.41 +1.0
648,908 + Dshi_0647 0.42 -0.3
648,950 - Dshi_0647 0.43 +1.3
648,983 - Dshi_0647 0.44 +0.8
649,006 + Dshi_0647 0.45 -0.2
649,063 + Dshi_0647 0.47 -0.1
649,143 - Dshi_0647 0.50 +0.3
649,166 + Dshi_0647 0.51 +0.1
649,183 + Dshi_0647 0.52 +1.1
649,279 + Dshi_0647 0.55 +1.2
649,371 + Dshi_0647 0.58 -1.6
649,378 + Dshi_0647 0.59 +0.0
649,379 - Dshi_0647 0.59 +1.8
649,389 + Dshi_0647 0.59 +0.2
649,462 - Dshi_0647 0.62 +0.1
649,480 + Dshi_0647 0.62 +0.7
649,550 + Dshi_0647 0.65 +0.2
649,569 + Dshi_0647 0.66 +0.3
649,647 + Dshi_0647 0.68 +0.2
649,769 + Dshi_0647 0.73 -0.5
649,772 - Dshi_0647 0.73 +1.2
649,784 + Dshi_0647 0.73 -0.5
649,800 - Dshi_0647 0.74 +1.0
649,810 - Dshi_0647 0.74 +0.6
650,070 + Dshi_0647 0.84 +1.0
650,079 + Dshi_0647 0.84 +1.2
650,136 + Dshi_0647 0.86 +0.2
650,136 + Dshi_0647 0.86 +0.1
650,322 + +0.3
650,322 + +0.8
650,348 + +0.3
650,437 - +0.6
650,480 - +0.2
650,485 - +0.9
650,559 - +0.5
650,628 + +1.0
650,645 + -0.1
650,755 - Dshi_0648 0.15 +0.1
651,022 - Dshi_0648 0.60 +0.2
651,116 + Dshi_0648 0.76 +0.7
651,128 + Dshi_0648 0.78 +0.4
651,262 + +0.0
651,290 + -0.2
651,308 + -0.1
651,366 - Dshi_0649 0.25 +0.6
651,366 - Dshi_0649 0.25 +0.4
651,444 + Dshi_0649 0.48 +0.3
651,481 + Dshi_0649 0.59 -0.1
651,486 + Dshi_0649 0.60 +0.5
651,489 - Dshi_0649 0.61 +0.4
651,499 - Dshi_0649 0.64 +0.4
651,499 - Dshi_0649 0.64 -0.7

Or see this region's nucleotide sequence