Experiment: Glycerol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0331 and Dshi_0332 overlap by 4 nucleotides Dshi_0332 and Dshi_0333 are separated by 62 nucleotides Dshi_0333 and Dshi_R0004 are separated by 155 nucleotides Dshi_R0004 and Dshi_0334 are separated by 51 nucleotides Dshi_0334 and Dshi_0335 are separated by 36 nucleotides
Dshi_0331: Dshi_0331 - protein of unknown function DUF37 (RefSeq), at 319,810 to 320,031
_0331
Dshi_0332: Dshi_0332 - ribonuclease P protein component (RefSeq), at 320,028 to 320,417
_0332
Dshi_0333: Dshi_0333 - ribosomal protein L34 (RefSeq), at 320,480 to 320,614
_0333
Dshi_R0004: Dshi_R0004 - tRNA-Arg (RefSeq), at 320,770 to 320,846
_R0004
Dshi_0334: Dshi_0334 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 320,898 to 322,301
_0334
Dshi_0335: Dshi_0335 - pyridine nucleotide-disulphide oxidoreductase dimerisation region (RefSeq), at 322,338 to 323,750
_0335
Position (kb) 320
321
322
323 Strain fitness (log2 ratio) -1
0
1 at 319.953 kb on + strand, within Dshi_0331 at 319.983 kb on + strand, within Dshi_0331 at 321.235 kb on + strand, within Dshi_0334 at 321.243 kb on - strand, within Dshi_0334 at 321.379 kb on - strand, within Dshi_0334 at 321.490 kb on - strand, within Dshi_0334 at 321.563 kb on + strand, within Dshi_0334 at 321.563 kb on + strand, within Dshi_0334 at 321.578 kb on + strand, within Dshi_0334 at 321.748 kb on + strand, within Dshi_0334 at 321.962 kb on - strand, within Dshi_0334 at 321.985 kb on - strand, within Dshi_0334 at 322.001 kb on + strand, within Dshi_0334 at 322.001 kb on + strand, within Dshi_0334 at 322.001 kb on + strand, within Dshi_0334 at 322.009 kb on - strand, within Dshi_0334 at 322.029 kb on + strand, within Dshi_0334 at 322.078 kb on + strand, within Dshi_0334 at 322.080 kb on + strand, within Dshi_0334 at 322.162 kb on - strand at 322.334 kb on - strand at 322.381 kb on + strand at 322.439 kb on + strand at 322.439 kb on + strand at 322.439 kb on + strand at 322.447 kb on - strand at 322.447 kb on - strand at 322.447 kb on - strand at 322.512 kb on - strand, within Dshi_0335 at 322.589 kb on + strand, within Dshi_0335 at 322.708 kb on + strand, within Dshi_0335 at 322.716 kb on - strand, within Dshi_0335 at 322.742 kb on - strand, within Dshi_0335 at 322.807 kb on + strand, within Dshi_0335 at 323.157 kb on - strand, within Dshi_0335 at 323.165 kb on - strand, within Dshi_0335 at 323.173 kb on - strand, within Dshi_0335 at 323.187 kb on + strand, within Dshi_0335 at 323.263 kb on - strand, within Dshi_0335 at 323.263 kb on - strand, within Dshi_0335 at 323.263 kb on - strand, within Dshi_0335 at 323.263 kb on - strand, within Dshi_0335
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol (C) remove 319,953 + Dshi_0331 0.64 -0.6 319,983 + Dshi_0331 0.78 -0.4 321,235 + Dshi_0334 0.24 -0.6 321,243 - Dshi_0334 0.25 -1.1 321,379 - Dshi_0334 0.34 +0.1 321,490 - Dshi_0334 0.42 -1.0 321,563 + Dshi_0334 0.47 -0.8 321,563 + Dshi_0334 0.47 -0.5 321,578 + Dshi_0334 0.48 -0.7 321,748 + Dshi_0334 0.61 -0.6 321,962 - Dshi_0334 0.76 -0.3 321,985 - Dshi_0334 0.77 -0.7 322,001 + Dshi_0334 0.79 -1.0 322,001 + Dshi_0334 0.79 -1.3 322,001 + Dshi_0334 0.79 -1.1 322,009 - Dshi_0334 0.79 -0.8 322,029 + Dshi_0334 0.81 -0.7 322,078 + Dshi_0334 0.84 -0.0 322,080 + Dshi_0334 0.84 +0.1 322,162 - -0.8 322,334 - +1.3 322,381 + -0.3 322,439 + -0.6 322,439 + -0.7 322,439 + +0.0 322,447 - -0.0 322,447 - +1.3 322,447 - -0.3 322,512 - Dshi_0335 0.12 +0.9 322,589 + Dshi_0335 0.18 +0.6 322,708 + Dshi_0335 0.26 -1.0 322,716 - Dshi_0335 0.27 +0.3 322,742 - Dshi_0335 0.29 +0.4 322,807 + Dshi_0335 0.33 +0.0 323,157 - Dshi_0335 0.58 +0.0 323,165 - Dshi_0335 0.59 -0.3 323,173 - Dshi_0335 0.59 +0.2 323,187 + Dshi_0335 0.60 +0.1 323,263 - Dshi_0335 0.65 -0.3 323,263 - Dshi_0335 0.65 +0.4 323,263 - Dshi_0335 0.65 +0.6 323,263 - Dshi_0335 0.65 +0.9
Or see this region's nucleotide sequence