Experiment: Glycerol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0250 and Dshi_0251 are separated by 3 nucleotides Dshi_0251 and Dshi_0252 are separated by 77 nucleotides Dshi_0252 and Dshi_0253 are separated by 55 nucleotides
Dshi_0250: Dshi_0250 - acriflavin resistance protein (RefSeq), at 246,745 to 249,237
_0250
Dshi_0251: Dshi_0251 - efflux transporter, RND family, MFP subunit (RefSeq), at 249,241 to 250,392
_0251
Dshi_0252: Dshi_0252 - transcriptional regulator, TetR family (RefSeq), at 250,470 to 251,144
_0252
Dshi_0253: Dshi_0253 - AMP-dependent synthetase and ligase (RefSeq), at 251,200 to 252,759
_0253
Position (kb) 249
250
251 Strain fitness (log2 ratio) -2
-1
0
1 at 248.251 kb on + strand, within Dshi_0250 at 248.366 kb on + strand, within Dshi_0250 at 248.374 kb on - strand, within Dshi_0250 at 248.432 kb on - strand, within Dshi_0250 at 248.483 kb on - strand, within Dshi_0250 at 248.521 kb on + strand, within Dshi_0250 at 248.535 kb on - strand, within Dshi_0250 at 248.588 kb on + strand, within Dshi_0250 at 248.666 kb on + strand, within Dshi_0250 at 248.693 kb on - strand, within Dshi_0250 at 248.818 kb on + strand, within Dshi_0250 at 248.861 kb on + strand, within Dshi_0250 at 248.870 kb on + strand, within Dshi_0250 at 248.960 kb on + strand, within Dshi_0250 at 249.026 kb on - strand at 249.078 kb on + strand at 249.090 kb on + strand at 249.201 kb on - strand at 249.480 kb on + strand, within Dshi_0251 at 249.725 kb on - strand, within Dshi_0251 at 249.731 kb on + strand, within Dshi_0251 at 249.939 kb on - strand, within Dshi_0251 at 250.245 kb on - strand, within Dshi_0251 at 250.303 kb on + strand at 250.303 kb on + strand at 250.303 kb on + strand at 250.383 kb on + strand at 250.555 kb on + strand, within Dshi_0252 at 250.612 kb on - strand, within Dshi_0252 at 250.675 kb on + strand, within Dshi_0252 at 250.728 kb on - strand, within Dshi_0252 at 250.801 kb on + strand, within Dshi_0252 at 250.823 kb on - strand, within Dshi_0252 at 251.019 kb on + strand, within Dshi_0252 at 251.146 kb on - strand at 251.185 kb on - strand at 251.227 kb on + strand at 251.244 kb on - strand at 251.273 kb on - strand at 251.351 kb on - strand at 251.375 kb on + strand, within Dshi_0253
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol (C) remove 248,251 + Dshi_0250 0.60 -1.2 248,366 + Dshi_0250 0.65 +0.2 248,374 - Dshi_0250 0.65 -0.1 248,432 - Dshi_0250 0.68 -0.4 248,483 - Dshi_0250 0.70 +0.4 248,521 + Dshi_0250 0.71 +0.2 248,535 - Dshi_0250 0.72 -0.3 248,588 + Dshi_0250 0.74 +0.3 248,666 + Dshi_0250 0.77 +0.1 248,693 - Dshi_0250 0.78 -1.4 248,818 + Dshi_0250 0.83 -0.2 248,861 + Dshi_0250 0.85 -0.9 248,870 + Dshi_0250 0.85 +0.4 248,960 + Dshi_0250 0.89 +1.3 249,026 - +0.6 249,078 + +0.5 249,090 + -2.0 249,201 - -0.2 249,480 + Dshi_0251 0.21 -0.5 249,725 - Dshi_0251 0.42 -0.2 249,731 + Dshi_0251 0.43 -0.8 249,939 - Dshi_0251 0.61 +0.4 250,245 - Dshi_0251 0.87 -0.1 250,303 + +0.4 250,303 + -0.4 250,303 + +0.1 250,383 + -0.3 250,555 + Dshi_0252 0.13 +0.7 250,612 - Dshi_0252 0.21 -0.8 250,675 + Dshi_0252 0.30 -0.7 250,728 - Dshi_0252 0.38 +0.0 250,801 + Dshi_0252 0.49 -0.9 250,823 - Dshi_0252 0.52 +0.1 251,019 + Dshi_0252 0.81 +0.2 251,146 - -0.2 251,185 - -0.0 251,227 + +0.4 251,244 - +0.3 251,273 - +0.0 251,351 - -0.7 251,375 + Dshi_0253 0.11 +0.2
Or see this region's nucleotide sequence