Strain Fitness in Shewanella oneidensis MR-1 around SO2776

Experiment: Tween 20 (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntfabF-1 and acpP are separated by 209 nucleotidesacpP and fabG-1 are separated by 163 nucleotidesfabG-1 and fabD are separated by 9 nucleotides SO2774: fabF-1 - 3-oxoacyl-(acyl-carrier-protein) synthase II (NCBI ptt file), at 2,896,330 to 2,897,568 fabF-1 SO2775: acpP - acyl carrier protein (NCBI ptt file), at 2,897,778 to 2,898,011 acpP SO2776: fabG-1 - 3-oxoacyl-(acyl-carrier-protein) reductase (NCBI ptt file), at 2,898,175 to 2,898,921 fabG-1 SO2777: fabD - malonyl CoA-acyl carrier protein transacylase (NCBI ptt file), at 2,898,931 to 2,899,857 fabD Position (kb) 2898 2899Strain fitness (log2 ratio) -1 0 1 2at 2897.280 kb on - strand, within fabF-1at 2897.285 kb on - strand, within fabF-1at 2897.301 kb on - strand, within fabF-1at 2897.360 kb on - strand, within fabF-1at 2897.473 kb on - strandat 2897.485 kb on - strandat 2897.532 kb on + strandat 2897.600 kb on + strandat 2898.140 kb on + strandat 2898.180 kb on - strandat 2898.180 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
remove
2,897,280 - fabF-1 SO2774 0.77 -0.5
2,897,285 - fabF-1 SO2774 0.77 +1.4
2,897,301 - fabF-1 SO2774 0.78 -0.9
2,897,360 - fabF-1 SO2774 0.83 +1.0
2,897,473 - -0.3
2,897,485 - +1.0
2,897,532 + +1.2
2,897,600 + +2.5
2,898,140 + -0.7
2,898,180 - -0.7
2,898,180 - -1.2

Or see this region's nucleotide sequence