Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt bcp and SO1878 are separated by 3 nucleotides SO1878 and dapA are separated by 171 nucleotides dapA and nlpB are separated by 3 nucleotides
SO1877: bcp - bacterioferritin comigratory protein (NCBI ptt file), at 1,973,442 to 1,973,912
bcp
SO1878: SO1878 - glycine cleavage system transcriptional repressor, putative (NCBI ptt file), at 1,973,916 to 1,974,467
SO1878
SO1879: dapA - dihydrodipicolinate synthase (NCBI ptt file), at 1,974,639 to 1,975,523
dapA
SO1880: nlpB - lipoprotein-34 NlpB (NCBI ptt file), at 1,975,527 to 1,976,624
nlpB
Position (kb) 1974
1975
1976 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1973.647 kb on - strand, within bcp at 1973.698 kb on - strand, within bcp at 1973.726 kb on - strand, within bcp at 1973.760 kb on + strand, within bcp at 1973.760 kb on + strand, within bcp at 1973.760 kb on + strand, within bcp at 1973.760 kb on + strand, within bcp at 1973.760 kb on + strand, within bcp at 1973.760 kb on + strand, within bcp at 1973.760 kb on + strand, within bcp at 1973.760 kb on + strand, within bcp at 1973.760 kb on + strand, within bcp at 1973.765 kb on + strand, within bcp at 1973.768 kb on - strand, within bcp at 1973.768 kb on - strand, within bcp at 1973.768 kb on - strand, within bcp at 1973.768 kb on - strand, within bcp at 1973.768 kb on - strand, within bcp at 1973.768 kb on - strand, within bcp at 1973.768 kb on - strand, within bcp at 1973.768 kb on - strand, within bcp at 1973.768 kb on - strand, within bcp at 1973.805 kb on + strand, within bcp at 1973.814 kb on - strand, within bcp at 1973.897 kb on + strand at 1973.970 kb on - strand at 1974.116 kb on - strand, within SO1878 at 1974.130 kb on + strand, within SO1878 at 1974.140 kb on + strand, within SO1878 at 1974.148 kb on - strand, within SO1878 at 1974.313 kb on + strand, within SO1878 at 1974.437 kb on - strand at 1974.445 kb on + strand at 1974.553 kb on - strand at 1974.579 kb on - strand at 1975.817 kb on + strand, within nlpB at 1975.940 kb on - strand, within nlpB at 1975.974 kb on + strand, within nlpB at 1975.982 kb on - strand, within nlpB at 1976.153 kb on + strand, within nlpB at 1976.161 kb on - strand, within nlpB at 1976.161 kb on - strand, within nlpB at 1976.161 kb on - strand, within nlpB at 1976.187 kb on + strand, within nlpB at 1976.242 kb on + strand, within nlpB at 1976.242 kb on + strand, within nlpB at 1976.370 kb on + strand, within nlpB at 1976.370 kb on + strand, within nlpB at 1976.378 kb on - strand, within nlpB
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 1,973,647 - bcp SO1877 0.44 -0.6 1,973,698 - bcp SO1877 0.54 -1.0 1,973,726 - bcp SO1877 0.60 -0.1 1,973,760 + bcp SO1877 0.68 +0.0 1,973,760 + bcp SO1877 0.68 +0.9 1,973,760 + bcp SO1877 0.68 -0.5 1,973,760 + bcp SO1877 0.68 +1.8 1,973,760 + bcp SO1877 0.68 -0.9 1,973,760 + bcp SO1877 0.68 -0.2 1,973,760 + bcp SO1877 0.68 -1.2 1,973,760 + bcp SO1877 0.68 -1.1 1,973,760 + bcp SO1877 0.68 -0.3 1,973,765 + bcp SO1877 0.69 -0.6 1,973,768 - bcp SO1877 0.69 +1.1 1,973,768 - bcp SO1877 0.69 +0.3 1,973,768 - bcp SO1877 0.69 +0.2 1,973,768 - bcp SO1877 0.69 -0.5 1,973,768 - bcp SO1877 0.69 -0.5 1,973,768 - bcp SO1877 0.69 -0.5 1,973,768 - bcp SO1877 0.69 -0.4 1,973,768 - bcp SO1877 0.69 -1.0 1,973,768 - bcp SO1877 0.69 +0.1 1,973,805 + bcp SO1877 0.77 +0.3 1,973,814 - bcp SO1877 0.79 +0.3 1,973,897 + -0.8 1,973,970 - -0.6 1,974,116 - SO1878 0.36 -0.2 1,974,130 + SO1878 0.39 +0.0 1,974,140 + SO1878 0.41 -0.2 1,974,148 - SO1878 0.42 +0.8 1,974,313 + SO1878 0.72 +0.0 1,974,437 - +0.5 1,974,445 + +0.9 1,974,553 - -4.2 1,974,579 - +0.2 1,975,817 + nlpB SO1880 0.26 -0.7 1,975,940 - nlpB SO1880 0.38 -0.6 1,975,974 + nlpB SO1880 0.41 -0.8 1,975,982 - nlpB SO1880 0.41 -0.9 1,976,153 + nlpB SO1880 0.57 -0.5 1,976,161 - nlpB SO1880 0.58 -2.0 1,976,161 - nlpB SO1880 0.58 -2.2 1,976,161 - nlpB SO1880 0.58 -2.2 1,976,187 + nlpB SO1880 0.60 -0.4 1,976,242 + nlpB SO1880 0.65 -0.1 1,976,242 + nlpB SO1880 0.65 -3.8 1,976,370 + nlpB SO1880 0.77 -1.6 1,976,370 + nlpB SO1880 0.77 +0.6 1,976,378 - nlpB SO1880 0.78 -0.6
Or see this region's nucleotide sequence