Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO1222 and serB are separated by 79 nucleotides serB and SO1224 are separated by 101 nucleotides
SO1222: SO1222 - hypothetical protein (NCBI ptt file), at 1,268,276 to 1,269,499
SO1222
SO_1223: serB - phosphoserine phosphatase (RefSeq), at 1,269,579 to 1,270,571
serB
SO1224: SO1224 - conserved hypothetical protein (NCBI ptt file), at 1,270,673 to 1,271,659
SO1224
Position (kb) 1269
1270
1271 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 1268.600 kb on - strand, within SO1222 at 1268.605 kb on + strand, within SO1222 at 1268.701 kb on - strand, within SO1222 at 1268.812 kb on + strand, within SO1222 at 1268.835 kb on + strand, within SO1222 at 1268.843 kb on - strand, within SO1222 at 1268.998 kb on - strand, within SO1222 at 1269.133 kb on + strand, within SO1222 at 1269.176 kb on + strand, within SO1222 at 1269.773 kb on + strand, within serB at 1269.818 kb on - strand, within serB at 1269.833 kb on + strand, within serB at 1269.838 kb on + strand, within serB at 1269.903 kb on + strand, within serB at 1270.109 kb on + strand, within serB at 1270.109 kb on + strand, within serB at 1270.117 kb on - strand, within serB at 1270.117 kb on - strand, within serB at 1270.125 kb on - strand, within serB at 1270.142 kb on - strand, within serB at 1270.193 kb on + strand, within serB at 1270.193 kb on + strand, within serB at 1270.193 kb on + strand, within serB at 1270.201 kb on - strand, within serB at 1270.234 kb on + strand, within serB at 1270.335 kb on - strand, within serB at 1270.358 kb on + strand, within serB at 1270.358 kb on + strand, within serB at 1270.358 kb on + strand, within serB at 1270.358 kb on + strand, within serB at 1270.366 kb on - strand, within serB at 1270.440 kb on + strand, within serB at 1270.718 kb on + strand at 1270.966 kb on - strand, within SO1224 at 1271.043 kb on + strand, within SO1224 at 1271.133 kb on + strand, within SO1224 at 1271.277 kb on - strand, within SO1224 at 1271.355 kb on - strand, within SO1224 at 1271.357 kb on + strand, within SO1224 at 1271.453 kb on + strand, within SO1224 at 1271.453 kb on + strand, within SO1224 at 1271.453 kb on + strand, within SO1224 at 1271.453 kb on + strand, within SO1224 at 1271.461 kb on - strand, within SO1224 at 1271.461 kb on - strand, within SO1224 at 1271.461 kb on - strand, within SO1224 at 1271.461 kb on - strand, within SO1224 at 1271.461 kb on - strand, within SO1224
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 1,268,600 - SO1222 0.26 +0.1 1,268,605 + SO1222 0.27 +0.1 1,268,701 - SO1222 0.35 +0.5 1,268,812 + SO1222 0.44 +0.3 1,268,835 + SO1222 0.46 +0.1 1,268,843 - SO1222 0.46 -0.3 1,268,998 - SO1222 0.59 +0.4 1,269,133 + SO1222 0.70 -0.4 1,269,176 + SO1222 0.74 +0.4 1,269,773 + serB SO_1223 0.20 -1.5 1,269,818 - serB SO_1223 0.24 -4.3 1,269,833 + serB SO_1223 0.26 -1.3 1,269,838 + serB SO_1223 0.26 -2.9 1,269,903 + serB SO_1223 0.33 -5.0 1,270,109 + serB SO_1223 0.53 -2.8 1,270,109 + serB SO_1223 0.53 -3.9 1,270,117 - serB SO_1223 0.54 -3.3 1,270,117 - serB SO_1223 0.54 -3.9 1,270,125 - serB SO_1223 0.55 -5.8 1,270,142 - serB SO_1223 0.57 -4.2 1,270,193 + serB SO_1223 0.62 -2.4 1,270,193 + serB SO_1223 0.62 -5.9 1,270,193 + serB SO_1223 0.62 -2.8 1,270,201 - serB SO_1223 0.63 -4.2 1,270,234 + serB SO_1223 0.66 -4.1 1,270,335 - serB SO_1223 0.76 -1.5 1,270,358 + serB SO_1223 0.78 -4.3 1,270,358 + serB SO_1223 0.78 -3.3 1,270,358 + serB SO_1223 0.78 -4.2 1,270,358 + serB SO_1223 0.78 -3.6 1,270,366 - serB SO_1223 0.79 -3.3 1,270,440 + serB SO_1223 0.87 -1.8 1,270,718 + -0.5 1,270,966 - SO1224 0.30 +1.2 1,271,043 + SO1224 0.37 +0.4 1,271,133 + SO1224 0.47 -0.3 1,271,277 - SO1224 0.61 -1.5 1,271,355 - SO1224 0.69 +0.4 1,271,357 + SO1224 0.69 +0.6 1,271,453 + SO1224 0.79 +0.4 1,271,453 + SO1224 0.79 -3.4 1,271,453 + SO1224 0.79 -0.5 1,271,453 + SO1224 0.79 +0.4 1,271,461 - SO1224 0.80 -0.2 1,271,461 - SO1224 0.80 -0.1 1,271,461 - SO1224 0.80 +0.2 1,271,461 - SO1224 0.80 -0.7 1,271,461 - SO1224 0.80 -1.3
Or see this region's nucleotide sequence