Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0768 and argR are separated by 113 nucleotides argR and mdh are separated by 291 nucleotides mdh and SO0771 are separated by 95 nucleotides SO0771 and SO0772 are separated by 195 nucleotides
SO0768: SO0768 - Putative NADH-flavin reductase (NCBI ptt file), at 781,957 to 782,589
SO0768
SO0769: argR - arginine repressor (NCBI ptt file), at 782,703 to 783,173
argR
SO0770: mdh - malate dehydrogenase (NCBI ptt file), at 783,465 to 784,400
mdh
SO0771: SO0771 - conserved hypothetical protein (NCBI ptt file), at 784,496 to 784,885
SO0771
SO0772: SO0772 - oxidoreductase, short chain dehydrogenase/reductase family (NCBI ptt file), at 785,081 to 785,800
SO0772
Position (kb) 783
784
785 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 782.520 kb on + strand, within SO0768 at 782.550 kb on - strand at 782.590 kb on + strand at 782.590 kb on + strand at 782.597 kb on + strand at 782.598 kb on - strand at 782.598 kb on - strand at 782.644 kb on + strand at 782.954 kb on - strand, within argR at 783.008 kb on - strand, within argR at 783.171 kb on - strand at 783.183 kb on - strand at 783.327 kb on - strand at 783.507 kb on + strand at 783.610 kb on + strand, within mdh at 783.837 kb on - strand, within mdh at 783.907 kb on + strand, within mdh at 784.852 kb on - strand at 784.889 kb on + strand at 784.889 kb on + strand at 784.897 kb on - strand at 784.897 kb on - strand at 784.964 kb on + strand at 784.964 kb on + strand at 785.004 kb on + strand at 785.077 kb on + strand at 785.085 kb on - strand at 785.167 kb on + strand, within SO0772 at 785.206 kb on + strand, within SO0772 at 785.220 kb on - strand, within SO0772 at 785.336 kb on + strand, within SO0772 at 785.369 kb on - strand, within SO0772
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 782,520 + SO0768 0.89 +0.1 782,550 - -0.0 782,590 + -0.2 782,590 + -0.6 782,597 + +0.5 782,598 - +0.3 782,598 - -0.4 782,644 + -0.7 782,954 - argR SO0769 0.53 +0.7 783,008 - argR SO0769 0.65 +2.0 783,171 - +2.3 783,183 - +1.0 783,327 - +0.1 783,507 + -4.1 783,610 + mdh SO0770 0.15 -3.3 783,837 - mdh SO0770 0.40 -2.3 783,907 + mdh SO0770 0.47 -2.6 784,852 - -0.1 784,889 + -0.5 784,889 + -0.4 784,897 - -3.4 784,897 - -0.5 784,964 + +0.1 784,964 + -2.9 785,004 + -0.6 785,077 + -1.3 785,085 - +1.0 785,167 + SO0772 0.12 +0.5 785,206 + SO0772 0.17 -0.4 785,220 - SO0772 0.19 +0.2 785,336 + SO0772 0.35 +0.9 785,369 - SO0772 0.40 -0.0
Or see this region's nucleotide sequence