Experiment: m.b. Vanillin 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_924 and HP15_925 are separated by 129 nucleotides HP15_925 and HP15_926 are separated by 78 nucleotides HP15_926 and HP15_927 overlap by 4 nucleotides HP15_927 and HP15_928 are separated by 78 nucleotides
HP15_924: HP15_924 - thioesterase family protein, at 938,799 to 939,215
_924
HP15_925: HP15_925 - alpha/beta hydrolase fold protein, at 939,345 to 940,022
_925
HP15_926: HP15_926 - branched-chain amino acid ABC transporter, ATP-binding protein, at 940,101 to 940,904
_926
HP15_927: HP15_927 - branched-chain amino acid ABC transporter, ATP-binding protein, at 940,901 to 941,623
_927
HP15_928: HP15_928 - extracellular ligand-binding receptor, at 941,702 to 942,907
_928
Position (kb) 940
941 Strain fitness (log2 ratio) -2
-1
0
1
2 at 939.123 kb on - strand, within HP15_924 at 939.138 kb on + strand, within HP15_924 at 939.149 kb on + strand, within HP15_924 at 939.157 kb on + strand, within HP15_924 at 939.265 kb on - strand at 939.335 kb on - strand at 939.408 kb on + strand at 939.416 kb on - strand, within HP15_925 at 939.423 kb on - strand, within HP15_925 at 939.453 kb on + strand, within HP15_925 at 939.579 kb on + strand, within HP15_925 at 939.620 kb on + strand, within HP15_925 at 939.628 kb on - strand, within HP15_925 at 939.628 kb on - strand, within HP15_925 at 939.628 kb on - strand, within HP15_925 at 939.641 kb on - strand, within HP15_925 at 939.641 kb on - strand, within HP15_925 at 939.707 kb on + strand, within HP15_925 at 939.807 kb on - strand, within HP15_925 at 939.869 kb on + strand, within HP15_925 at 939.895 kb on + strand, within HP15_925 at 939.895 kb on + strand, within HP15_925 at 940.102 kb on + strand at 940.134 kb on - strand at 940.286 kb on + strand, within HP15_926 at 940.299 kb on + strand, within HP15_926 at 940.307 kb on - strand, within HP15_926 at 940.423 kb on - strand, within HP15_926 at 940.474 kb on + strand, within HP15_926 at 940.482 kb on - strand, within HP15_926 at 940.482 kb on - strand, within HP15_926 at 940.642 kb on + strand, within HP15_926 at 940.686 kb on + strand, within HP15_926 at 940.692 kb on + strand, within HP15_926 at 940.709 kb on - strand, within HP15_926 at 940.753 kb on + strand, within HP15_926 at 940.771 kb on - strand, within HP15_926 at 940.772 kb on - strand, within HP15_926 at 940.986 kb on + strand, within HP15_927 at 940.997 kb on + strand, within HP15_927 at 941.005 kb on - strand, within HP15_927 at 941.005 kb on - strand, within HP15_927 at 941.020 kb on - strand, within HP15_927 at 941.053 kb on - strand, within HP15_927 at 941.097 kb on + strand, within HP15_927 at 941.256 kb on + strand, within HP15_927 at 941.288 kb on - strand, within HP15_927 at 941.313 kb on + strand, within HP15_927 at 941.413 kb on + strand, within HP15_927 at 941.441 kb on - strand, within HP15_927 at 941.479 kb on + strand, within HP15_927 at 941.505 kb on + strand, within HP15_927 at 941.537 kb on + strand, within HP15_927 at 941.545 kb on - strand, within HP15_927 at 941.583 kb on + strand at 941.583 kb on + strand at 941.659 kb on + strand at 941.809 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vanillin 2.5 mM remove 939,123 - HP15_924 0.78 +0.1 939,138 + HP15_924 0.81 -0.8 939,149 + HP15_924 0.84 -0.2 939,157 + HP15_924 0.86 -0.3 939,265 - +1.0 939,335 - -1.6 939,408 + +0.0 939,416 - HP15_925 0.10 +0.3 939,423 - HP15_925 0.12 -0.2 939,453 + HP15_925 0.16 +0.4 939,579 + HP15_925 0.35 +0.6 939,620 + HP15_925 0.41 +0.0 939,628 - HP15_925 0.42 -1.3 939,628 - HP15_925 0.42 +1.8 939,628 - HP15_925 0.42 -0.7 939,641 - HP15_925 0.44 -1.9 939,641 - HP15_925 0.44 -1.0 939,707 + HP15_925 0.53 +0.3 939,807 - HP15_925 0.68 -1.6 939,869 + HP15_925 0.77 +0.4 939,895 + HP15_925 0.81 -0.2 939,895 + HP15_925 0.81 -0.0 940,102 + -0.1 940,134 - +0.5 940,286 + HP15_926 0.23 +2.2 940,299 + HP15_926 0.25 +0.5 940,307 - HP15_926 0.26 +1.1 940,423 - HP15_926 0.40 +0.4 940,474 + HP15_926 0.46 +0.5 940,482 - HP15_926 0.47 +0.0 940,482 - HP15_926 0.47 -0.1 940,642 + HP15_926 0.67 +0.2 940,686 + HP15_926 0.73 +0.7 940,692 + HP15_926 0.74 -0.6 940,709 - HP15_926 0.76 -0.0 940,753 + HP15_926 0.81 +0.6 940,771 - HP15_926 0.83 -1.2 940,772 - HP15_926 0.83 -0.5 940,986 + HP15_927 0.12 -0.1 940,997 + HP15_927 0.13 -0.2 941,005 - HP15_927 0.14 -0.0 941,005 - HP15_927 0.14 +0.5 941,020 - HP15_927 0.16 +0.2 941,053 - HP15_927 0.21 -0.2 941,097 + HP15_927 0.27 +1.8 941,256 + HP15_927 0.49 +0.2 941,288 - HP15_927 0.54 -1.2 941,313 + HP15_927 0.57 +0.8 941,413 + HP15_927 0.71 -0.6 941,441 - HP15_927 0.75 -0.2 941,479 + HP15_927 0.80 +0.7 941,505 + HP15_927 0.84 -0.1 941,537 + HP15_927 0.88 -0.5 941,545 - HP15_927 0.89 -0.5 941,583 + -0.4 941,583 + -0.5 941,659 + +1.2 941,809 + +0.1
Or see this region's nucleotide sequence