Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08340

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c08330 and PGA1_c08340 are separated by 62 nucleotidesPGA1_c08340 and PGA1_c08350 are separated by 105 nucleotides PGA1_c08330: PGA1_c08330 - Predicted Zn-dependent hydrolases of the beta-lactamase fold, at 862,272 to 863,183 _c08330 PGA1_c08340: PGA1_c08340 - methionyl-tRNA synthetase MetG, at 863,246 to 864,973 _c08340 PGA1_c08350: PGA1_c08350 - putative MFS-type transporter, at 865,079 to 866,302 _c08350 Position (kb) 863 864 865Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 862.247 kb on - strandat 862.262 kb on + strandat 862.287 kb on - strandat 862.305 kb on + strandat 862.305 kb on + strandat 862.305 kb on + strandat 862.305 kb on + strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.336 kb on - strandat 862.380 kb on - strand, within PGA1_c08330at 862.432 kb on + strand, within PGA1_c08330at 862.440 kb on - strand, within PGA1_c08330at 862.452 kb on - strand, within PGA1_c08330at 862.555 kb on + strand, within PGA1_c08330at 862.560 kb on + strand, within PGA1_c08330at 862.569 kb on + strand, within PGA1_c08330at 862.608 kb on + strand, within PGA1_c08330at 862.613 kb on + strand, within PGA1_c08330at 862.613 kb on + strand, within PGA1_c08330at 862.621 kb on - strand, within PGA1_c08330at 862.621 kb on - strand, within PGA1_c08330at 862.621 kb on - strand, within PGA1_c08330at 862.621 kb on - strand, within PGA1_c08330at 862.622 kb on - strand, within PGA1_c08330at 862.657 kb on + strand, within PGA1_c08330at 862.729 kb on + strand, within PGA1_c08330at 862.740 kb on + strand, within PGA1_c08330at 862.781 kb on + strand, within PGA1_c08330at 862.813 kb on + strand, within PGA1_c08330at 862.856 kb on + strand, within PGA1_c08330at 862.864 kb on - strand, within PGA1_c08330at 862.902 kb on + strand, within PGA1_c08330at 862.917 kb on - strand, within PGA1_c08330at 862.932 kb on + strand, within PGA1_c08330at 863.081 kb on + strand, within PGA1_c08330at 863.081 kb on + strand, within PGA1_c08330at 863.086 kb on + strand, within PGA1_c08330at 863.094 kb on - strandat 863.094 kb on - strandat 863.094 kb on - strandat 863.127 kb on - strandat 863.220 kb on - strandat 865.056 kb on + strandat 865.135 kb on + strandat 865.165 kb on - strandat 865.165 kb on - strandat 865.202 kb on + strand, within PGA1_c08350at 865.207 kb on + strand, within PGA1_c08350at 865.305 kb on - strand, within PGA1_c08350at 865.345 kb on + strand, within PGA1_c08350at 865.345 kb on + strand, within PGA1_c08350at 865.345 kb on + strand, within PGA1_c08350at 865.391 kb on + strand, within PGA1_c08350at 865.427 kb on + strand, within PGA1_c08350at 865.435 kb on - strand, within PGA1_c08350at 865.478 kb on + strand, within PGA1_c08350at 865.478 kb on + strand, within PGA1_c08350at 865.484 kb on - strand, within PGA1_c08350at 865.487 kb on + strand, within PGA1_c08350at 865.673 kb on - strand, within PGA1_c08350at 865.705 kb on - strand, within PGA1_c08350at 865.762 kb on + strand, within PGA1_c08350at 865.773 kb on + strand, within PGA1_c08350at 865.902 kb on - strand, within PGA1_c08350at 865.920 kb on - strand, within PGA1_c08350at 865.933 kb on - strand, within PGA1_c08350at 865.968 kb on + strand, within PGA1_c08350at 865.968 kb on + strand, within PGA1_c08350

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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862,247 - -0.1
862,262 + +0.5
862,287 - -0.7
862,305 + -1.4
862,305 + +0.1
862,305 + +1.1
862,305 + -1.9
862,313 - -1.3
862,313 - -0.3
862,313 - -0.1
862,313 - +0.1
862,313 - -0.8
862,313 - -1.8
862,313 - +3.4
862,313 - +3.2
862,313 - -1.1
862,313 - +0.1
862,313 - +0.9
862,313 - -1.7
862,313 - -1.7
862,313 - +0.6
862,313 - -1.4
862,313 - +0.1
862,313 - +0.6
862,313 - -0.0
862,313 - +1.4
862,313 - -1.1
862,313 - -1.0
862,313 - +0.5
862,313 - +2.1
862,313 - +0.1
862,336 - -0.1
862,380 - PGA1_c08330 0.12 -1.2
862,432 + PGA1_c08330 0.18 -2.4
862,440 - PGA1_c08330 0.18 +1.9
862,452 - PGA1_c08330 0.20 -1.5
862,555 + PGA1_c08330 0.31 -0.8
862,560 + PGA1_c08330 0.32 -0.0
862,569 + PGA1_c08330 0.33 -2.8
862,608 + PGA1_c08330 0.37 +1.4
862,613 + PGA1_c08330 0.37 +0.6
862,613 + PGA1_c08330 0.37 -0.8
862,621 - PGA1_c08330 0.38 -1.6
862,621 - PGA1_c08330 0.38 -1.8
862,621 - PGA1_c08330 0.38 -0.9
862,621 - PGA1_c08330 0.38 -1.4
862,622 - PGA1_c08330 0.38 -0.4
862,657 + PGA1_c08330 0.42 -0.1
862,729 + PGA1_c08330 0.50 +0.5
862,740 + PGA1_c08330 0.51 -0.5
862,781 + PGA1_c08330 0.56 -0.2
862,813 + PGA1_c08330 0.59 -0.6
862,856 + PGA1_c08330 0.64 +0.3
862,864 - PGA1_c08330 0.65 -1.3
862,902 + PGA1_c08330 0.69 -0.1
862,917 - PGA1_c08330 0.71 -0.1
862,932 + PGA1_c08330 0.72 -0.9
863,081 + PGA1_c08330 0.89 -1.9
863,081 + PGA1_c08330 0.89 -1.1
863,086 + PGA1_c08330 0.89 +0.1
863,094 - +0.5
863,094 - +0.3
863,094 - +0.0
863,127 - -0.7
863,220 - +0.5
865,056 + -0.2
865,135 + -0.3
865,165 - -0.1
865,165 - -2.0
865,202 + PGA1_c08350 0.10 +1.1
865,207 + PGA1_c08350 0.10 +1.2
865,305 - PGA1_c08350 0.18 -1.3
865,345 + PGA1_c08350 0.22 +0.1
865,345 + PGA1_c08350 0.22 +1.8
865,345 + PGA1_c08350 0.22 +0.1
865,391 + PGA1_c08350 0.25 -0.4
865,427 + PGA1_c08350 0.28 -0.4
865,435 - PGA1_c08350 0.29 +1.0
865,478 + PGA1_c08350 0.33 +1.1
865,478 + PGA1_c08350 0.33 +0.6
865,484 - PGA1_c08350 0.33 -0.2
865,487 + PGA1_c08350 0.33 +0.5
865,673 - PGA1_c08350 0.49 -0.1
865,705 - PGA1_c08350 0.51 +2.0
865,762 + PGA1_c08350 0.56 -1.3
865,773 + PGA1_c08350 0.57 -0.1
865,902 - PGA1_c08350 0.67 +1.9
865,920 - PGA1_c08350 0.69 +0.6
865,933 - PGA1_c08350 0.70 -1.7
865,968 + PGA1_c08350 0.73 -0.4
865,968 + PGA1_c08350 0.73 +0.7

Or see this region's nucleotide sequence